Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_05361 and H281DRAFT_05362 are separated by 333 nucleotides H281DRAFT_05362 and H281DRAFT_05363 are separated by 36 nucleotides H281DRAFT_05363 and H281DRAFT_05364 are separated by 14 nucleotides
H281DRAFT_05361: H281DRAFT_05361 - type VI secretion system protein VasD, at 114,644 to 115,309
_05361
H281DRAFT_05362: H281DRAFT_05362 - Tetratricopeptide repeat-containing protein, at 115,643 to 116,329
_05362
H281DRAFT_05363: H281DRAFT_05363 - type VI secretion system protein ImpB, at 116,366 to 116,914
_05363
H281DRAFT_05364: H281DRAFT_05364 - type VI secretion system protein ImpC, at 116,929 to 118,419
_05364
Position (kb)
115
116
117 Strain fitness (log2 ratio)
-1
0
1
2 at 114.645 kb on + strand at 114.646 kb on - strand at 114.646 kb on - strand at 114.655 kb on + strand at 114.655 kb on + strand at 114.655 kb on + strand at 114.656 kb on - strand at 114.656 kb on - strand at 114.742 kb on + strand, within H281DRAFT_05361 at 114.742 kb on + strand, within H281DRAFT_05361 at 114.742 kb on + strand, within H281DRAFT_05361 at 114.742 kb on + strand, within H281DRAFT_05361 at 114.742 kb on + strand, within H281DRAFT_05361 at 114.743 kb on - strand, within H281DRAFT_05361 at 114.743 kb on - strand, within H281DRAFT_05361 at 114.758 kb on + strand, within H281DRAFT_05361 at 114.864 kb on - strand, within H281DRAFT_05361 at 114.882 kb on + strand, within H281DRAFT_05361 at 114.882 kb on + strand at 114.882 kb on + strand, within H281DRAFT_05361 at 114.939 kb on - strand, within H281DRAFT_05361 at 114.939 kb on - strand, within H281DRAFT_05361 at 115.014 kb on + strand, within H281DRAFT_05361 at 115.014 kb on + strand, within H281DRAFT_05361 at 115.014 kb on + strand, within H281DRAFT_05361 at 115.014 kb on + strand, within H281DRAFT_05361 at 115.077 kb on + strand, within H281DRAFT_05361 at 115.079 kb on + strand, within H281DRAFT_05361 at 115.079 kb on + strand, within H281DRAFT_05361 at 115.080 kb on - strand, within H281DRAFT_05361 at 115.080 kb on - strand, within H281DRAFT_05361 at 115.080 kb on - strand, within H281DRAFT_05361 at 115.239 kb on - strand, within H281DRAFT_05361 at 115.272 kb on + strand at 115.272 kb on + strand at 115.273 kb on - strand at 115.273 kb on - strand at 115.273 kb on - strand at 115.273 kb on - strand at 115.273 kb on - strand at 115.303 kb on + strand at 115.304 kb on - strand at 115.304 kb on - strand at 115.304 kb on - strand at 115.322 kb on + strand at 115.346 kb on - strand at 115.346 kb on - strand at 115.366 kb on - strand at 115.392 kb on - strand at 115.403 kb on + strand at 115.403 kb on + strand at 115.403 kb on + strand at 115.404 kb on - strand at 115.404 kb on - strand at 115.404 kb on - strand at 115.509 kb on - strand at 115.565 kb on + strand at 115.566 kb on - strand at 115.566 kb on - strand at 115.568 kb on + strand at 115.568 kb on + strand at 115.570 kb on + strand at 115.659 kb on + strand at 115.660 kb on - strand at 115.660 kb on - strand at 115.662 kb on + strand at 115.663 kb on - strand at 115.669 kb on - strand at 115.669 kb on - strand at 115.677 kb on + strand at 115.678 kb on - strand at 115.751 kb on - strand, within H281DRAFT_05362 at 115.751 kb on - strand, within H281DRAFT_05362 at 115.754 kb on - strand, within H281DRAFT_05362 at 115.774 kb on + strand, within H281DRAFT_05362 at 115.774 kb on + strand, within H281DRAFT_05362 at 115.775 kb on - strand, within H281DRAFT_05362 at 115.775 kb on - strand, within H281DRAFT_05362 at 115.779 kb on + strand, within H281DRAFT_05362 at 115.779 kb on + strand, within H281DRAFT_05362 at 115.817 kb on + strand, within H281DRAFT_05362 at 115.818 kb on - strand, within H281DRAFT_05362 at 115.818 kb on - strand at 115.898 kb on + strand, within H281DRAFT_05362 at 115.898 kb on + strand, within H281DRAFT_05362 at 115.899 kb on - strand, within H281DRAFT_05362 at 115.969 kb on - strand, within H281DRAFT_05362 at 115.969 kb on - strand, within H281DRAFT_05362 at 116.184 kb on + strand, within H281DRAFT_05362 at 116.185 kb on - strand, within H281DRAFT_05362 at 116.385 kb on + strand at 116.385 kb on + strand at 116.385 kb on + strand at 116.386 kb on - strand at 116.432 kb on + strand, within H281DRAFT_05363 at 116.432 kb on + strand, within H281DRAFT_05363 at 116.432 kb on + strand, within H281DRAFT_05363 at 116.433 kb on - strand, within H281DRAFT_05363 at 116.433 kb on - strand, within H281DRAFT_05363 at 116.433 kb on - strand, within H281DRAFT_05363 at 116.433 kb on - strand, within H281DRAFT_05363 at 116.433 kb on - strand, within H281DRAFT_05363 at 116.433 kb on - strand, within H281DRAFT_05363 at 116.433 kb on - strand, within H281DRAFT_05363 at 116.433 kb on - strand, within H281DRAFT_05363 at 116.433 kb on - strand, within H281DRAFT_05363 at 116.912 kb on + strand at 116.912 kb on + strand at 116.913 kb on - strand at 116.916 kb on + strand at 116.917 kb on - strand at 116.917 kb on - strand at 116.917 kb on - strand at 117.236 kb on - strand, within H281DRAFT_05364 at 117.236 kb on - strand, within H281DRAFT_05364
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 114,645 + +0.5 114,646 - -0.2 114,646 - +0.1 114,655 + +0.2 114,655 + +0.3 114,655 + +0.3 114,656 - -0.1 114,656 - -0.0 114,742 + H281DRAFT_05361 0.15 +0.1 114,742 + H281DRAFT_05361 0.15 +0.4 114,742 + H281DRAFT_05361 0.15 +0.1 114,742 + H281DRAFT_05361 0.15 +0.2 114,742 + H281DRAFT_05361 0.15 -0.4 114,743 - H281DRAFT_05361 0.15 -0.1 114,743 - H281DRAFT_05361 0.15 +0.1 114,758 + H281DRAFT_05361 0.17 +0.4 114,864 - H281DRAFT_05361 0.33 -0.6 114,882 + H281DRAFT_05361 0.36 +0.4 114,882 + +1.0 114,882 + H281DRAFT_05361 0.36 -0.3 114,939 - H281DRAFT_05361 0.44 -0.2 114,939 - H281DRAFT_05361 0.44 +0.4 115,014 + H281DRAFT_05361 0.56 +0.1 115,014 + H281DRAFT_05361 0.56 +0.6 115,014 + H281DRAFT_05361 0.56 +0.1 115,014 + H281DRAFT_05361 0.56 +0.1 115,077 + H281DRAFT_05361 0.65 +0.3 115,079 + H281DRAFT_05361 0.65 +0.3 115,079 + H281DRAFT_05361 0.65 +0.1 115,080 - H281DRAFT_05361 0.65 +0.0 115,080 - H281DRAFT_05361 0.65 +0.5 115,080 - H281DRAFT_05361 0.65 +0.3 115,239 - H281DRAFT_05361 0.89 +1.1 115,272 + -0.0 115,272 + +0.4 115,273 - -0.0 115,273 - +2.6 115,273 - -0.5 115,273 - +0.5 115,273 - +1.2 115,303 + +0.8 115,304 - +0.2 115,304 - +0.1 115,304 - +0.5 115,322 + +1.6 115,346 - +0.1 115,346 - +0.2 115,366 - +0.3 115,392 - +0.5 115,403 + +0.3 115,403 + +0.3 115,403 + -0.4 115,404 - +0.2 115,404 - -0.3 115,404 - +0.1 115,509 - +0.1 115,565 + -0.2 115,566 - +0.4 115,566 - -0.2 115,568 + +0.6 115,568 + +0.3 115,570 + -0.5 115,659 + +0.2 115,660 - +1.3 115,660 - -0.2 115,662 + +0.6 115,663 - +0.9 115,669 - +0.1 115,669 - +0.2 115,677 + -0.3 115,678 - +0.3 115,751 - H281DRAFT_05362 0.16 +0.6 115,751 - H281DRAFT_05362 0.16 +0.6 115,754 - H281DRAFT_05362 0.16 +0.3 115,774 + H281DRAFT_05362 0.19 -0.5 115,774 + H281DRAFT_05362 0.19 +0.8 115,775 - H281DRAFT_05362 0.19 -0.0 115,775 - H281DRAFT_05362 0.19 +0.2 115,779 + H281DRAFT_05362 0.20 +0.1 115,779 + H281DRAFT_05362 0.20 -0.3 115,817 + H281DRAFT_05362 0.25 +1.0 115,818 - H281DRAFT_05362 0.25 +0.3 115,818 - -0.7 115,898 + H281DRAFT_05362 0.37 -0.2 115,898 + H281DRAFT_05362 0.37 +0.1 115,899 - H281DRAFT_05362 0.37 +0.5 115,969 - H281DRAFT_05362 0.47 +0.2 115,969 - H281DRAFT_05362 0.47 +0.4 116,184 + H281DRAFT_05362 0.79 +0.9 116,185 - H281DRAFT_05362 0.79 +0.5 116,385 + -0.0 116,385 + +0.4 116,385 + -0.3 116,386 - +0.0 116,432 + H281DRAFT_05363 0.12 +0.8 116,432 + H281DRAFT_05363 0.12 +0.4 116,432 + H281DRAFT_05363 0.12 +0.1 116,433 - H281DRAFT_05363 0.12 -0.1 116,433 - H281DRAFT_05363 0.12 +0.1 116,433 - H281DRAFT_05363 0.12 +0.6 116,433 - H281DRAFT_05363 0.12 +0.5 116,433 - H281DRAFT_05363 0.12 -0.1 116,433 - H281DRAFT_05363 0.12 -0.2 116,433 - H281DRAFT_05363 0.12 +0.6 116,433 - H281DRAFT_05363 0.12 +0.2 116,433 - H281DRAFT_05363 0.12 +0.0 116,912 + +0.7 116,912 + +0.5 116,913 - -0.1 116,916 + +0.0 116,917 - +0.4 116,917 - -0.0 116,917 - +0.4 117,236 - H281DRAFT_05364 0.21 +0.4 117,236 - H281DRAFT_05364 0.21 +0.4
Or see this region's nucleotide sequence