Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_05358

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_05357 and H281DRAFT_05358 are separated by 409 nucleotidesH281DRAFT_05358 and H281DRAFT_05359 are separated by 75 nucleotidesH281DRAFT_05359 and H281DRAFT_05360 overlap by 4 nucleotides H281DRAFT_05357: H281DRAFT_05357 - ornithine cyclodeaminase, at 109,498 to 110,433 _05357 H281DRAFT_05358: H281DRAFT_05358 - glucose-6-phosphate 1-dehydrogenase, at 110,843 to 112,324 _05358 H281DRAFT_05359: H281DRAFT_05359 - type VI secretion system protein ImpK, at 112,400 to 113,179 _05359 H281DRAFT_05360: H281DRAFT_05360 - type VI secretion system protein ImpJ, at 113,176 to 114,522 _05360 Position (kb) 110 111 112 113Strain fitness (log2 ratio) -1 0 1at 109.952 kb on - strand, within H281DRAFT_05357at 110.123 kb on - strand, within H281DRAFT_05357at 110.497 kb on + strandat 110.529 kb on - strandat 110.532 kb on + strandat 110.533 kb on - strandat 110.609 kb on + strandat 110.610 kb on - strandat 110.666 kb on + strandat 110.842 kb on + strandat 110.945 kb on + strandat 110.945 kb on + strandat 110.945 kb on + strandat 110.945 kb on + strandat 110.945 kb on + strandat 110.946 kb on - strandat 110.946 kb on - strandat 110.946 kb on - strandat 111.026 kb on + strand, within H281DRAFT_05358at 111.123 kb on - strand, within H281DRAFT_05358at 111.155 kb on + strand, within H281DRAFT_05358at 111.156 kb on - strand, within H281DRAFT_05358at 111.203 kb on + strand, within H281DRAFT_05358at 111.204 kb on - strand, within H281DRAFT_05358at 111.204 kb on - strand, within H281DRAFT_05358at 111.204 kb on - strand, within H281DRAFT_05358at 111.204 kb on - strand, within H281DRAFT_05358at 111.267 kb on + strand, within H281DRAFT_05358at 111.389 kb on + strand, within H281DRAFT_05358at 111.470 kb on + strand, within H281DRAFT_05358at 111.470 kb on + strand, within H281DRAFT_05358at 111.471 kb on - strand, within H281DRAFT_05358at 111.471 kb on - strand, within H281DRAFT_05358at 111.473 kb on - strand, within H281DRAFT_05358at 111.720 kb on - strand, within H281DRAFT_05358at 111.735 kb on + strand, within H281DRAFT_05358at 111.758 kb on + strand, within H281DRAFT_05358at 111.759 kb on - strand, within H281DRAFT_05358at 111.823 kb on + strand, within H281DRAFT_05358at 111.891 kb on + strand, within H281DRAFT_05358at 111.956 kb on + strand, within H281DRAFT_05358at 112.106 kb on + strand, within H281DRAFT_05358at 112.107 kb on - strand, within H281DRAFT_05358at 112.241 kb on + strandat 112.242 kb on - strandat 112.242 kb on - strandat 112.323 kb on - strandat 112.323 kb on - strandat 112.381 kb on + strandat 112.381 kb on + strandat 112.494 kb on + strand, within H281DRAFT_05359at 112.495 kb on - strand, within H281DRAFT_05359at 112.495 kb on - strand, within H281DRAFT_05359at 112.495 kb on - strand, within H281DRAFT_05359at 112.674 kb on + strand, within H281DRAFT_05359at 112.674 kb on + strand, within H281DRAFT_05359at 112.704 kb on + strand, within H281DRAFT_05359at 112.704 kb on + strand, within H281DRAFT_05359at 112.704 kb on + strand, within H281DRAFT_05359at 112.704 kb on + strand, within H281DRAFT_05359at 112.705 kb on - strand, within H281DRAFT_05359at 112.705 kb on - strand, within H281DRAFT_05359at 112.705 kb on - strand, within H281DRAFT_05359at 112.705 kb on - strand, within H281DRAFT_05359at 112.705 kb on - strand, within H281DRAFT_05359at 112.705 kb on - strand, within H281DRAFT_05359at 112.705 kb on - strand, within H281DRAFT_05359at 112.705 kb on - strand, within H281DRAFT_05359at 112.795 kb on - strand, within H281DRAFT_05359at 112.935 kb on + strand, within H281DRAFT_05359at 112.936 kb on - strand, within H281DRAFT_05359at 112.936 kb on - strand, within H281DRAFT_05359at 113.077 kb on - strand, within H281DRAFT_05359at 113.077 kb on - strand, within H281DRAFT_05359at 113.106 kb on + strandat 113.107 kb on - strandat 113.172 kb on + strandat 113.231 kb on + strandat 113.231 kb on + strandat 113.231 kb on + strandat 113.231 kb on + strandat 113.231 kb on + strandat 113.232 kb on - strandat 113.232 kb on - strandat 113.232 kb on - strandat 113.232 kb on - strandat 113.267 kb on + strandat 113.268 kb on - strandat 113.297 kb on + strandat 113.298 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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109,952 - H281DRAFT_05357 0.49 +0.1
110,123 - H281DRAFT_05357 0.67 +0.2
110,497 + +0.1
110,529 - -0.2
110,532 + -0.1
110,533 - +0.4
110,609 + +0.1
110,610 - +0.3
110,666 + +0.9
110,842 + +0.1
110,945 + +0.8
110,945 + +0.3
110,945 + +0.4
110,945 + +0.8
110,945 + -0.2
110,946 - -0.2
110,946 - +0.6
110,946 - +0.1
111,026 + H281DRAFT_05358 0.12 -0.2
111,123 - H281DRAFT_05358 0.19 +0.5
111,155 + H281DRAFT_05358 0.21 -1.7
111,156 - H281DRAFT_05358 0.21 +0.2
111,203 + H281DRAFT_05358 0.24 -0.3
111,204 - H281DRAFT_05358 0.24 +0.1
111,204 - H281DRAFT_05358 0.24 -0.5
111,204 - H281DRAFT_05358 0.24 -0.5
111,204 - H281DRAFT_05358 0.24 -0.1
111,267 + H281DRAFT_05358 0.29 +0.1
111,389 + H281DRAFT_05358 0.37 -0.2
111,470 + H281DRAFT_05358 0.42 -1.0
111,470 + H281DRAFT_05358 0.42 -0.4
111,471 - H281DRAFT_05358 0.42 -0.2
111,471 - H281DRAFT_05358 0.42 -0.5
111,473 - H281DRAFT_05358 0.43 +0.6
111,720 - H281DRAFT_05358 0.59 +1.2
111,735 + H281DRAFT_05358 0.60 -0.1
111,758 + H281DRAFT_05358 0.62 -0.0
111,759 - H281DRAFT_05358 0.62 -0.3
111,823 + H281DRAFT_05358 0.66 -0.2
111,891 + H281DRAFT_05358 0.71 +1.3
111,956 + H281DRAFT_05358 0.75 -0.9
112,106 + H281DRAFT_05358 0.85 +0.2
112,107 - H281DRAFT_05358 0.85 +0.8
112,241 + -0.5
112,242 - +0.8
112,242 - +0.8
112,323 - -0.1
112,323 - +1.4
112,381 + +0.7
112,381 + +0.1
112,494 + H281DRAFT_05359 0.12 +0.5
112,495 - H281DRAFT_05359 0.12 +0.4
112,495 - H281DRAFT_05359 0.12 +0.4
112,495 - H281DRAFT_05359 0.12 -0.5
112,674 + H281DRAFT_05359 0.35 +0.5
112,674 + H281DRAFT_05359 0.35 +0.4
112,704 + H281DRAFT_05359 0.39 +0.2
112,704 + H281DRAFT_05359 0.39 +0.3
112,704 + H281DRAFT_05359 0.39 +0.2
112,704 + H281DRAFT_05359 0.39 +0.6
112,705 - H281DRAFT_05359 0.39 +0.2
112,705 - H281DRAFT_05359 0.39 -0.3
112,705 - H281DRAFT_05359 0.39 -0.1
112,705 - H281DRAFT_05359 0.39 +0.3
112,705 - H281DRAFT_05359 0.39 +0.1
112,705 - H281DRAFT_05359 0.39 -0.2
112,705 - H281DRAFT_05359 0.39 +0.6
112,705 - H281DRAFT_05359 0.39 +0.3
112,795 - H281DRAFT_05359 0.51 +0.1
112,935 + H281DRAFT_05359 0.69 +0.3
112,936 - H281DRAFT_05359 0.69 +1.4
112,936 - H281DRAFT_05359 0.69 +0.3
113,077 - H281DRAFT_05359 0.87 -0.1
113,077 - H281DRAFT_05359 0.87 +0.3
113,106 + -0.0
113,107 - +0.6
113,172 + -0.0
113,231 + -0.6
113,231 + +0.2
113,231 + -0.0
113,231 + +0.0
113,231 + +0.1
113,232 - +0.4
113,232 - +0.1
113,232 - +0.1
113,232 - +0.6
113,267 + +0.4
113,268 - +0.5
113,297 + +0.7
113,298 - -0.4

Or see this region's nucleotide sequence