Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_04075

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_04074 and H281DRAFT_04075 overlap by 4 nucleotidesH281DRAFT_04075 and H281DRAFT_04076 are separated by 158 nucleotides H281DRAFT_04074: H281DRAFT_04074 - 16S rRNA (cytosine967-C5)-methyltransferase, at 176,101 to 177,360 _04074 H281DRAFT_04075: H281DRAFT_04075 - formyltetrahydrofolate-dependent phosphoribosylglycinamide formyltransferase, at 177,357 to 177,968 _04075 H281DRAFT_04076: H281DRAFT_04076 - FMN adenylyltransferase /riboflavin kinase, at 178,127 to 179,122 _04076 Position (kb) 177 178Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 176.606 kb on + strand, within H281DRAFT_04074at 176.606 kb on + strand, within H281DRAFT_04074at 176.607 kb on - strand, within H281DRAFT_04074at 176.607 kb on - strand, within H281DRAFT_04074at 176.607 kb on - strand, within H281DRAFT_04074at 176.866 kb on + strand, within H281DRAFT_04074at 176.866 kb on + strand, within H281DRAFT_04074at 176.866 kb on + strand, within H281DRAFT_04074at 176.866 kb on + strand, within H281DRAFT_04074at 176.867 kb on - strand, within H281DRAFT_04074at 176.921 kb on + strand, within H281DRAFT_04074at 176.984 kb on + strand, within H281DRAFT_04074at 176.985 kb on - strand, within H281DRAFT_04074at 176.985 kb on - strand, within H281DRAFT_04074at 176.985 kb on - strand, within H281DRAFT_04074at 176.985 kb on - strand, within H281DRAFT_04074at 177.352 kb on + strandat 177.352 kb on + strandat 177.352 kb on + strandat 177.352 kb on + strandat 177.352 kb on + strandat 177.352 kb on + strandat 177.352 kb on + strandat 177.352 kb on + strandat 177.352 kb on + strandat 177.353 kb on - strandat 177.413 kb on + strandat 177.414 kb on - strandat 177.414 kb on - strandat 177.479 kb on - strand, within H281DRAFT_04075at 177.482 kb on + strand, within H281DRAFT_04075at 177.482 kb on + strand, within H281DRAFT_04075at 177.482 kb on + strand, within H281DRAFT_04075at 177.482 kb on + strand, within H281DRAFT_04075at 177.482 kb on + strand, within H281DRAFT_04075at 177.482 kb on + strand, within H281DRAFT_04075at 177.482 kb on + strand, within H281DRAFT_04075at 177.482 kb on + strand, within H281DRAFT_04075at 177.482 kb on + strand, within H281DRAFT_04075at 177.482 kb on + strand, within H281DRAFT_04075at 177.483 kb on - strand, within H281DRAFT_04075at 177.483 kb on - strand, within H281DRAFT_04075at 177.483 kb on - strand, within H281DRAFT_04075at 177.744 kb on - strand, within H281DRAFT_04075at 177.959 kb on + strandat 177.959 kb on + strandat 177.960 kb on - strandat 178.076 kb on + strandat 178.076 kb on + strandat 178.077 kb on - strandat 178.078 kb on + strandat 178.078 kb on + strandat 178.078 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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176,606 + H281DRAFT_04074 0.40 +0.6
176,606 + H281DRAFT_04074 0.40 -1.2
176,607 - H281DRAFT_04074 0.40 -0.3
176,607 - H281DRAFT_04074 0.40 +0.5
176,607 - H281DRAFT_04074 0.40 +0.2
176,866 + H281DRAFT_04074 0.61 -0.2
176,866 + H281DRAFT_04074 0.61 -0.0
176,866 + H281DRAFT_04074 0.61 +2.4
176,866 + H281DRAFT_04074 0.61 -0.2
176,867 - H281DRAFT_04074 0.61 -0.1
176,921 + H281DRAFT_04074 0.65 -2.2
176,984 + H281DRAFT_04074 0.70 +0.1
176,985 - H281DRAFT_04074 0.70 +0.9
176,985 - H281DRAFT_04074 0.70 +1.6
176,985 - H281DRAFT_04074 0.70 +0.1
176,985 - H281DRAFT_04074 0.70 -0.3
177,352 + -0.5
177,352 + -0.2
177,352 + -1.0
177,352 + +1.9
177,352 + -1.5
177,352 + +0.6
177,352 + -0.5
177,352 + +0.3
177,352 + -0.4
177,353 - -0.1
177,413 + -1.2
177,414 - -0.4
177,414 - +0.6
177,479 - H281DRAFT_04075 0.20 -1.5
177,482 + H281DRAFT_04075 0.20 +0.3
177,482 + H281DRAFT_04075 0.20 -0.6
177,482 + H281DRAFT_04075 0.20 -0.7
177,482 + H281DRAFT_04075 0.20 -0.7
177,482 + H281DRAFT_04075 0.20 -0.9
177,482 + H281DRAFT_04075 0.20 +0.2
177,482 + H281DRAFT_04075 0.20 +0.1
177,482 + H281DRAFT_04075 0.20 +0.6
177,482 + H281DRAFT_04075 0.20 -3.0
177,482 + H281DRAFT_04075 0.20 +0.1
177,483 - H281DRAFT_04075 0.21 -0.1
177,483 - H281DRAFT_04075 0.21 +0.4
177,483 - H281DRAFT_04075 0.21 +1.6
177,744 - H281DRAFT_04075 0.63 +0.1
177,959 + -0.9
177,959 + +1.2
177,960 - +0.2
178,076 + +0.6
178,076 + +0.5
178,077 - -0.4
178,078 + +0.1
178,078 + -0.2
178,078 + -0.5

Or see this region's nucleotide sequence