Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_03733

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_03731 and H281DRAFT_03732 overlap by 11 nucleotidesH281DRAFT_03732 and H281DRAFT_03733 overlap by 4 nucleotidesH281DRAFT_03733 and H281DRAFT_03734 overlap by 14 nucleotides H281DRAFT_03731: H281DRAFT_03731 - carbohydrate ABC transporter membrane protein 2, CUT1 family, at 245,398 to 246,210 _03731 H281DRAFT_03732: H281DRAFT_03732 - carbohydrate ABC transporter membrane protein 1, CUT1 family, at 246,200 to 247,096 _03732 H281DRAFT_03733: H281DRAFT_03733 - carbohydrate ABC transporter ATP-binding protein, CUT1 family, at 247,093 to 248,217 _03733 H281DRAFT_03734: H281DRAFT_03734 - carbohydrate ABC transporter ATP-binding protein, CUT1 family, at 248,204 to 249,298 _03734 Position (kb) 247 248 249Strain fitness (log2 ratio) -1 0 1 2at 246.097 kb on - strand, within H281DRAFT_03731at 246.163 kb on - strandat 246.165 kb on - strandat 246.672 kb on + strand, within H281DRAFT_03732at 246.885 kb on - strand, within H281DRAFT_03732at 247.262 kb on + strand, within H281DRAFT_03733at 248.289 kb on - strandat 248.587 kb on + strand, within H281DRAFT_03734at 248.838 kb on - strand, within H281DRAFT_03734at 248.838 kb on - strand, within H281DRAFT_03734at 249.190 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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246,097 - H281DRAFT_03731 0.86 -1.0
246,163 - +0.6
246,165 - -0.5
246,672 + H281DRAFT_03732 0.53 +1.9
246,885 - H281DRAFT_03732 0.76 -1.0
247,262 + H281DRAFT_03733 0.15 -0.7
248,289 - -0.8
248,587 + H281DRAFT_03734 0.35 -0.4
248,838 - H281DRAFT_03734 0.58 -0.4
248,838 - H281DRAFT_03734 0.58 -1.0
249,190 + -0.7

Or see this region's nucleotide sequence