Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_03346

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_03345 and H281DRAFT_03346 are separated by 139 nucleotidesH281DRAFT_03346 and H281DRAFT_03347 are separated by 140 nucleotides H281DRAFT_03345: H281DRAFT_03345 - NHL repeat-containing protein, at 404,293 to 405,504 _03345 H281DRAFT_03346: H281DRAFT_03346 - Metal-dependent hydrolase, endonuclease/exonuclease/phosphatase family, at 405,644 to 406,516 _03346 H281DRAFT_03347: H281DRAFT_03347 - formiminoglutamase, at 406,657 to 407,625 _03347 Position (kb) 405 406 407Strain fitness (log2 ratio) -1 0 1 2at 404.663 kb on + strand, within H281DRAFT_03345at 404.664 kb on - strand, within H281DRAFT_03345at 404.666 kb on - strand, within H281DRAFT_03345at 405.940 kb on + strand, within H281DRAFT_03346at 406.572 kb on + strandat 406.728 kb on - strandat 406.878 kb on - strand, within H281DRAFT_03347at 406.879 kb on + strand, within H281DRAFT_03347at 406.879 kb on + strand, within H281DRAFT_03347at 406.879 kb on + strand, within H281DRAFT_03347at 406.879 kb on + strand, within H281DRAFT_03347at 406.957 kb on + strandat 406.996 kb on + strand, within H281DRAFT_03347at 407.039 kb on + strand, within H281DRAFT_03347at 407.039 kb on + strand, within H281DRAFT_03347at 407.040 kb on - strand, within H281DRAFT_03347

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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404,663 + H281DRAFT_03345 0.31 +2.6
404,664 - H281DRAFT_03345 0.31 +0.4
404,666 - H281DRAFT_03345 0.31 +0.1
405,940 + H281DRAFT_03346 0.34 +0.7
406,572 + -0.4
406,728 - +1.1
406,878 - H281DRAFT_03347 0.23 -0.3
406,879 + H281DRAFT_03347 0.23 -0.2
406,879 + H281DRAFT_03347 0.23 -0.5
406,879 + H281DRAFT_03347 0.23 +1.2
406,879 + H281DRAFT_03347 0.23 -0.0
406,957 + -1.0
406,996 + H281DRAFT_03347 0.35 +0.0
407,039 + H281DRAFT_03347 0.39 +0.6
407,039 + H281DRAFT_03347 0.39 -0.2
407,040 - H281DRAFT_03347 0.40 -0.5

Or see this region's nucleotide sequence