Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_03342

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_03341 and H281DRAFT_03342 are separated by 57 nucleotidesH281DRAFT_03342 and H281DRAFT_03343 are separated by 254 nucleotides H281DRAFT_03341: H281DRAFT_03341 - Predicted arabinose efflux permease, MFS family, at 398,996 to 400,357 _03341 H281DRAFT_03342: H281DRAFT_03342 - Glyoxylase, beta-lactamase superfamily II, at 400,415 to 401,290 _03342 H281DRAFT_03343: H281DRAFT_03343 - Membrane-bound lytic murein transglycosylase MltF, at 401,545 to 403,167 _03343 Position (kb) 400 401 402Strain fitness (log2 ratio) -1 0 1at 399.518 kb on - strand, within H281DRAFT_03341at 399.518 kb on - strand, within H281DRAFT_03341at 399.726 kb on + strand, within H281DRAFT_03341at 399.890 kb on + strand, within H281DRAFT_03341at 399.891 kb on - strand, within H281DRAFT_03341at 400.064 kb on + strand, within H281DRAFT_03341at 400.314 kb on - strandat 401.473 kb on + strandat 401.525 kb on + strandat 401.645 kb on - strandat 401.897 kb on - strand, within H281DRAFT_03343at 401.974 kb on + strandat 402.248 kb on - strand, within H281DRAFT_03343at 402.248 kb on - strand, within H281DRAFT_03343

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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399,518 - H281DRAFT_03341 0.38 +0.4
399,518 - H281DRAFT_03341 0.38 -0.3
399,726 + H281DRAFT_03341 0.54 +0.5
399,890 + H281DRAFT_03341 0.66 +0.0
399,891 - H281DRAFT_03341 0.66 +0.6
400,064 + H281DRAFT_03341 0.78 -0.1
400,314 - +0.9
401,473 + +0.2
401,525 + +0.3
401,645 - -0.1
401,897 - H281DRAFT_03343 0.22 -0.4
401,974 + -0.0
402,248 - H281DRAFT_03343 0.43 -0.6
402,248 - H281DRAFT_03343 0.43 -0.1

Or see this region's nucleotide sequence