Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_03251

Experiment: LB

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntH281DRAFT_03249 and H281DRAFT_03250 are separated by 23 nucleotidesH281DRAFT_03250 and H281DRAFT_03251 overlap by 4 nucleotidesH281DRAFT_03251 and H281DRAFT_03252 are separated by 99 nucleotidesH281DRAFT_03252 and H281DRAFT_03253 are separated by 8 nucleotides H281DRAFT_03249: H281DRAFT_03249 - hypothetical protein, at 307,630 to 308,046 _03249 H281DRAFT_03250: H281DRAFT_03250 - Uncharacterized conserved protein YndB, AHSA1/START domain, at 308,070 to 308,597 _03250 H281DRAFT_03251: H281DRAFT_03251 - transcriptional regulator, ArsR family, at 308,594 to 308,929 _03251 H281DRAFT_03252: H281DRAFT_03252 - 2,4-dihydroxyhept-2-enedioate aldolase (EC 4.1.2.-), at 309,029 to 309,832 _03252 H281DRAFT_03253: H281DRAFT_03253 - 2-oxohept-3-enedioate hydratase, at 309,841 to 310,644 _03253 Position (kb) 308 309Strain fitness (log2 ratio) -1 0 1at 307.842 kb on - strand, within H281DRAFT_03249at 308.248 kb on - strand, within H281DRAFT_03250at 308.930 kb on - strandat 309.030 kb on + strandat 309.075 kb on + strandat 309.075 kb on + strandat 309.159 kb on + strand, within H281DRAFT_03252at 309.555 kb on - strand, within H281DRAFT_03252at 309.839 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction LB
remove
307,842 - H281DRAFT_03249 0.51 +1.6
308,248 - H281DRAFT_03250 0.34 -0.6
308,930 - -0.9
309,030 + -0.4
309,075 + +1.1
309,075 + +0.0
309,159 + H281DRAFT_03252 0.16 +0.6
309,555 - H281DRAFT_03252 0.65 +0.8
309,839 - -0.1

Or see this region's nucleotide sequence