Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_02820

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_02819 and H281DRAFT_02820 overlap by 4 nucleotidesH281DRAFT_02820 and H281DRAFT_02821 are separated by 143 nucleotides H281DRAFT_02819: H281DRAFT_02819 - DNA ligase-1, at 410,071 to 411,756 _02819 H281DRAFT_02820: H281DRAFT_02820 - putative mRNA 3-end processing factor, at 411,753 to 412,916 _02820 H281DRAFT_02821: H281DRAFT_02821 - YihY family inner membrane protein, at 413,060 to 413,962 _02821 Position (kb) 411 412 413Strain fitness (log2 ratio) -1 0 1at 411.252 kb on + strand, within H281DRAFT_02819at 411.253 kb on - strand, within H281DRAFT_02819at 411.378 kb on - strand, within H281DRAFT_02819at 411.677 kb on + strandat 411.734 kb on + strandat 411.867 kb on - strandat 411.878 kb on - strand, within H281DRAFT_02820at 412.100 kb on + strand, within H281DRAFT_02820at 412.103 kb on - strand, within H281DRAFT_02820at 412.103 kb on - strand, within H281DRAFT_02820at 412.566 kb on + strand, within H281DRAFT_02820at 412.642 kb on + strand, within H281DRAFT_02820at 412.817 kb on - strandat 413.063 kb on + strandat 413.320 kb on - strand, within H281DRAFT_02821at 413.456 kb on - strand, within H281DRAFT_02821at 413.501 kb on + strand, within H281DRAFT_02821at 413.502 kb on - strand, within H281DRAFT_02821at 413.678 kb on + strand, within H281DRAFT_02821at 413.679 kb on - strand, within H281DRAFT_02821at 413.681 kb on - strand, within H281DRAFT_02821at 413.814 kb on - strand, within H281DRAFT_02821at 413.904 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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411,252 + H281DRAFT_02819 0.70 -0.6
411,253 - H281DRAFT_02819 0.70 -0.2
411,378 - H281DRAFT_02819 0.78 -0.3
411,677 + -0.6
411,734 + +1.3
411,867 - -0.2
411,878 - H281DRAFT_02820 0.11 +0.1
412,100 + H281DRAFT_02820 0.30 -0.0
412,103 - H281DRAFT_02820 0.30 -0.5
412,103 - H281DRAFT_02820 0.30 -0.2
412,566 + H281DRAFT_02820 0.70 -0.4
412,642 + H281DRAFT_02820 0.76 -0.3
412,817 - -0.6
413,063 + +0.1
413,320 - H281DRAFT_02821 0.29 -0.4
413,456 - H281DRAFT_02821 0.44 +0.2
413,501 + H281DRAFT_02821 0.49 +0.4
413,502 - H281DRAFT_02821 0.49 +0.5
413,678 + H281DRAFT_02821 0.68 +0.1
413,679 - H281DRAFT_02821 0.69 -0.7
413,681 - H281DRAFT_02821 0.69 +0.9
413,814 - H281DRAFT_02821 0.83 +0.7
413,904 - -0.4

Or see this region's nucleotide sequence