Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_02779

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_02778 and H281DRAFT_02779 are separated by 9 nucleotidesH281DRAFT_02779 and H281DRAFT_02780 overlap by 8 nucleotidesH281DRAFT_02780 and H281DRAFT_02781 are separated by 56 nucleotides H281DRAFT_02778: H281DRAFT_02778 - two-component system, NtrC family, sensor kinase, at 369,254 to 370,672 _02778 H281DRAFT_02779: H281DRAFT_02779 - Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain, at 370,682 to 371,050 _02779 H281DRAFT_02780: H281DRAFT_02780 - chemotaxis protein CheC, at 371,043 to 371,645 _02780 H281DRAFT_02781: H281DRAFT_02781 - Response regulator c-di-GMP phosphodiesterase, RpfG family, contains REC and HD-GYP domains, at 371,702 to 373,093 _02781 Position (kb) 370 371 372Strain fitness (log2 ratio) -1 0 1at 370.170 kb on - strand, within H281DRAFT_02778at 370.485 kb on - strand, within H281DRAFT_02778at 371.859 kb on - strand, within H281DRAFT_02781

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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370,170 - H281DRAFT_02778 0.65 -0.8
370,485 - H281DRAFT_02778 0.87 -0.6
371,859 - H281DRAFT_02781 0.11 -0.3

Or see this region's nucleotide sequence