Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_01063

Experiment: LB

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntH281DRAFT_01062 and H281DRAFT_01063 are separated by 462 nucleotidesH281DRAFT_01063 and H281DRAFT_01064 are separated by 2 nucleotides H281DRAFT_01062: H281DRAFT_01062 - hypothetical protein, at 1,193,001 to 1,193,606 _01062 H281DRAFT_01063: H281DRAFT_01063 - hypothetical protein, at 1,194,069 to 1,194,452 _01063 H281DRAFT_01064: H281DRAFT_01064 - Tetratricopeptide (TPR) repeat, at 1,194,455 to 1,196,017 _01064 Position (kb) 1194 1195Strain fitness (log2 ratio) -1 0 1at 1193.094 kb on - strand, within H281DRAFT_01062at 1193.312 kb on + strand, within H281DRAFT_01062at 1193.379 kb on + strand, within H281DRAFT_01062at 1193.466 kb on + strand, within H281DRAFT_01062at 1193.536 kb on - strand, within H281DRAFT_01062at 1193.596 kb on + strandat 1193.920 kb on - strandat 1194.149 kb on + strand, within H281DRAFT_01063at 1194.292 kb on + strand, within H281DRAFT_01063at 1194.317 kb on - strand, within H281DRAFT_01063at 1194.336 kb on + strand, within H281DRAFT_01063at 1194.801 kb on + strand, within H281DRAFT_01064at 1194.882 kb on - strand, within H281DRAFT_01064at 1195.234 kb on - strandat 1195.234 kb on - strand, within H281DRAFT_01064at 1195.279 kb on - strand, within H281DRAFT_01064

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction LB
remove
1,193,094 - H281DRAFT_01062 0.15 -0.6
1,193,312 + H281DRAFT_01062 0.51 -0.6
1,193,379 + H281DRAFT_01062 0.62 +0.1
1,193,466 + H281DRAFT_01062 0.77 -1.0
1,193,536 - H281DRAFT_01062 0.88 +0.8
1,193,596 + -0.5
1,193,920 - -0.2
1,194,149 + H281DRAFT_01063 0.21 -0.2
1,194,292 + H281DRAFT_01063 0.58 +0.2
1,194,317 - H281DRAFT_01063 0.65 +0.8
1,194,336 + H281DRAFT_01063 0.70 +0.9
1,194,801 + H281DRAFT_01064 0.22 -0.3
1,194,882 - H281DRAFT_01064 0.27 +0.5
1,195,234 - +0.6
1,195,234 - H281DRAFT_01064 0.50 -0.3
1,195,279 - H281DRAFT_01064 0.53 +0.9

Or see this region's nucleotide sequence