Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_01059 and H281DRAFT_01060 are separated by 199 nucleotides H281DRAFT_01060 and H281DRAFT_01061 overlap by 4 nucleotides H281DRAFT_01061 and H281DRAFT_01062 are separated by 125 nucleotides
H281DRAFT_01059: H281DRAFT_01059 - Predicted transcriptional regulators, at 1,189,705 to 1,190,628
_01059
H281DRAFT_01060: H281DRAFT_01060 - KUP system potassium uptake protein, at 1,190,828 to 1,192,705
_01060
H281DRAFT_01061: H281DRAFT_01061 - hypothetical protein, at 1,192,702 to 1,192,875
_01061
H281DRAFT_01062: H281DRAFT_01062 - hypothetical protein, at 1,193,001 to 1,193,606
_01062
Position (kb)
1190
1191
1192
1193 Strain fitness (log2 ratio)
-2
-1
0
1 at 1189.868 kb on - strand at 1189.926 kb on - strand, within H281DRAFT_01059 at 1189.926 kb on - strand, within H281DRAFT_01059 at 1189.926 kb on - strand, within H281DRAFT_01059 at 1189.929 kb on + strand, within H281DRAFT_01059 at 1189.929 kb on + strand, within H281DRAFT_01059 at 1190.125 kb on - strand, within H281DRAFT_01059 at 1190.267 kb on - strand, within H281DRAFT_01059 at 1190.291 kb on + strand, within H281DRAFT_01059 at 1190.623 kb on + strand at 1190.623 kb on + strand at 1191.054 kb on - strand, within H281DRAFT_01060 at 1191.081 kb on + strand, within H281DRAFT_01060 at 1191.205 kb on + strand, within H281DRAFT_01060 at 1191.921 kb on + strand, within H281DRAFT_01060 at 1191.922 kb on - strand, within H281DRAFT_01060 at 1192.135 kb on + strand, within H281DRAFT_01060 at 1192.138 kb on + strand, within H281DRAFT_01060 at 1192.163 kb on - strand, within H281DRAFT_01060 at 1192.234 kb on - strand, within H281DRAFT_01060 at 1192.272 kb on + strand, within H281DRAFT_01060 at 1192.399 kb on - strand, within H281DRAFT_01060 at 1192.401 kb on + strand, within H281DRAFT_01060 at 1192.402 kb on - strand, within H281DRAFT_01060 at 1192.521 kb on - strand at 1192.524 kb on - strand at 1192.598 kb on + strand at 1192.614 kb on + strand at 1192.641 kb on + strand at 1192.738 kb on + strand, within H281DRAFT_01061 at 1192.810 kb on + strand, within H281DRAFT_01061 at 1192.811 kb on - strand, within H281DRAFT_01061 at 1192.860 kb on + strand at 1192.860 kb on + strand at 1192.999 kb on + strand at 1192.999 kb on + strand at 1193.094 kb on - strand, within H281DRAFT_01062 at 1193.312 kb on + strand, within H281DRAFT_01062 at 1193.379 kb on + strand, within H281DRAFT_01062 at 1193.466 kb on + strand, within H281DRAFT_01062 at 1193.536 kb on - strand, within H281DRAFT_01062 at 1193.596 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 1,189,868 - -0.6 1,189,926 - H281DRAFT_01059 0.24 -0.5 1,189,926 - H281DRAFT_01059 0.24 +0.9 1,189,926 - H281DRAFT_01059 0.24 +0.3 1,189,929 + H281DRAFT_01059 0.24 +0.1 1,189,929 + H281DRAFT_01059 0.24 +0.6 1,190,125 - H281DRAFT_01059 0.45 -0.8 1,190,267 - H281DRAFT_01059 0.61 +0.7 1,190,291 + H281DRAFT_01059 0.63 +1.6 1,190,623 + +0.1 1,190,623 + -1.8 1,191,054 - H281DRAFT_01060 0.12 +0.5 1,191,081 + H281DRAFT_01060 0.13 -0.4 1,191,205 + H281DRAFT_01060 0.20 -0.1 1,191,921 + H281DRAFT_01060 0.58 +0.3 1,191,922 - H281DRAFT_01060 0.58 -0.1 1,192,135 + H281DRAFT_01060 0.70 +0.7 1,192,138 + H281DRAFT_01060 0.70 -0.6 1,192,163 - H281DRAFT_01060 0.71 +0.7 1,192,234 - H281DRAFT_01060 0.75 +0.1 1,192,272 + H281DRAFT_01060 0.77 +0.3 1,192,399 - H281DRAFT_01060 0.84 +0.6 1,192,401 + H281DRAFT_01060 0.84 +0.0 1,192,402 - H281DRAFT_01060 0.84 +0.1 1,192,521 - -0.3 1,192,524 - -0.5 1,192,598 + -1.0 1,192,614 + -0.4 1,192,641 + +0.5 1,192,738 + H281DRAFT_01061 0.21 -1.1 1,192,810 + H281DRAFT_01061 0.62 -0.4 1,192,811 - H281DRAFT_01061 0.63 +0.2 1,192,860 + -0.0 1,192,860 + -0.2 1,192,999 + -0.0 1,192,999 + -0.2 1,193,094 - H281DRAFT_01062 0.15 -0.6 1,193,312 + H281DRAFT_01062 0.51 -0.6 1,193,379 + H281DRAFT_01062 0.62 +0.1 1,193,466 + H281DRAFT_01062 0.77 -1.0 1,193,536 - H281DRAFT_01062 0.88 +0.8 1,193,596 + -0.5
Or see this region's nucleotide sequence