Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_00377

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_00376 and H281DRAFT_00377 are separated by 302 nucleotidesH281DRAFT_00377 and H281DRAFT_00378 are separated by 167 nucleotides H281DRAFT_00376: H281DRAFT_00376 - transcriptional regulator, TetR family, at 414,063 to 414,803 _00376 H281DRAFT_00377: H281DRAFT_00377 - N-carbamoyl-L-amino-acid hydrolase, at 415,106 to 416,386 _00377 H281DRAFT_00378: H281DRAFT_00378 - glutamate synthase (NADPH/NADH) small chain, at 416,554 to 417,903 _00378 Position (kb) 415 416 417Strain fitness (log2 ratio) -1 0 1at 414.236 kb on + strand, within H281DRAFT_00376at 414.238 kb on + strand, within H281DRAFT_00376at 414.440 kb on - strand, within H281DRAFT_00376at 414.557 kb on - strand, within H281DRAFT_00376at 414.835 kb on - strandat 416.228 kb on + strand, within H281DRAFT_00377at 416.341 kb on - strandat 416.554 kb on - strandat 416.689 kb on + strand, within H281DRAFT_00378at 417.112 kb on + strand, within H281DRAFT_00378

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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414,236 + H281DRAFT_00376 0.23 +0.9
414,238 + H281DRAFT_00376 0.24 +0.2
414,440 - H281DRAFT_00376 0.51 -0.2
414,557 - H281DRAFT_00376 0.67 -0.6
414,835 - -0.4
416,228 + H281DRAFT_00377 0.88 -0.4
416,341 - -0.2
416,554 - +0.2
416,689 + H281DRAFT_00378 0.10 -0.5
417,112 + H281DRAFT_00378 0.41 -0.3

Or see this region's nucleotide sequence