Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_06566 and H281DRAFT_06567 are separated by 515 nucleotides H281DRAFT_06567 and H281DRAFT_06568 are separated by 177 nucleotides H281DRAFT_06568 and H281DRAFT_06569 are separated by 961 nucleotides
H281DRAFT_06566: H281DRAFT_06566 - hypothetical protein, at 7,320 to 7,823
_06566
H281DRAFT_06567: H281DRAFT_06567 - hypothetical protein, at 8,339 to 8,518
_06567
H281DRAFT_06568: H281DRAFT_06568 - DNA-binding protein H-NS, at 8,696 to 8,980
_06568
H281DRAFT_06569: H281DRAFT_06569 - hypothetical protein, at 9,942 to 10,133
_06569
Position (kb)
8
9 Strain fitness (log2 ratio)
-1
0
1
2 at 7.706 kb on + strand, within H281DRAFT_06566 at 7.706 kb on + strand, within H281DRAFT_06566 at 7.706 kb on + strand, within H281DRAFT_06566 at 7.706 kb on + strand, within H281DRAFT_06566 at 7.706 kb on + strand, within H281DRAFT_06566 at 7.707 kb on - strand, within H281DRAFT_06566 at 7.710 kb on + strand, within H281DRAFT_06566 at 7.710 kb on + strand, within H281DRAFT_06566 at 7.729 kb on + strand, within H281DRAFT_06566 at 7.729 kb on + strand, within H281DRAFT_06566 at 7.730 kb on - strand, within H281DRAFT_06566 at 7.730 kb on - strand, within H281DRAFT_06566 at 7.767 kb on - strand, within H281DRAFT_06566 at 7.864 kb on + strand at 7.865 kb on - strand at 7.873 kb on - strand at 8.031 kb on + strand at 8.031 kb on + strand at 8.032 kb on - strand at 8.032 kb on - strand at 8.032 kb on - strand at 8.045 kb on + strand at 8.073 kb on + strand at 8.135 kb on - strand at 8.135 kb on - strand at 8.136 kb on + strand at 8.170 kb on + strand at 8.240 kb on + strand at 8.240 kb on + strand at 8.241 kb on - strand at 8.363 kb on + strand, within H281DRAFT_06567 at 8.363 kb on + strand, within H281DRAFT_06567 at 8.511 kb on + strand at 8.511 kb on + strand at 8.531 kb on + strand at 8.531 kb on + strand at 8.535 kb on + strand at 8.535 kb on + strand at 8.535 kb on + strand at 8.535 kb on + strand at 8.536 kb on - strand at 8.536 kb on - strand at 8.536 kb on - strand at 8.536 kb on - strand at 8.536 kb on - strand at 8.536 kb on - strand at 8.544 kb on - strand at 8.562 kb on + strand at 8.562 kb on + strand at 8.563 kb on - strand at 8.563 kb on - strand at 8.617 kb on + strand at 8.617 kb on + strand at 8.617 kb on + strand at 8.618 kb on - strand at 8.618 kb on - strand at 8.689 kb on - strand at 8.788 kb on + strand, within H281DRAFT_06568 at 8.788 kb on + strand, within H281DRAFT_06568 at 8.793 kb on + strand, within H281DRAFT_06568 at 8.960 kb on + strand at 8.960 kb on + strand at 8.961 kb on - strand at 8.961 kb on - strand at 8.971 kb on - strand at 9.016 kb on + strand at 9.016 kb on + strand at 9.016 kb on + strand at 9.017 kb on - strand at 9.095 kb on + strand at 9.095 kb on + strand at 9.195 kb on - strand at 9.220 kb on + strand at 9.288 kb on + strand at 9.288 kb on + strand at 9.288 kb on + strand at 9.288 kb on + strand at 9.288 kb on + strand at 9.289 kb on - strand at 9.412 kb on + strand at 9.413 kb on - strand at 9.426 kb on - strand at 9.511 kb on + strand at 9.512 kb on - strand at 9.565 kb on + strand at 9.680 kb on + strand at 9.680 kb on + strand at 9.680 kb on + strand at 9.681 kb on - strand at 9.681 kb on - strand at 9.681 kb on - strand at 9.685 kb on + strand at 9.713 kb on + strand at 9.714 kb on - strand at 9.714 kb on - strand at 9.714 kb on - strand at 9.834 kb on + strand at 9.857 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 7,706 + H281DRAFT_06566 0.77 +0.0 7,706 + H281DRAFT_06566 0.77 -0.1 7,706 + H281DRAFT_06566 0.77 -0.1 7,706 + H281DRAFT_06566 0.77 +0.3 7,706 + H281DRAFT_06566 0.77 +0.1 7,707 - H281DRAFT_06566 0.77 +0.1 7,710 + H281DRAFT_06566 0.77 +0.4 7,710 + H281DRAFT_06566 0.77 +0.4 7,729 + H281DRAFT_06566 0.81 +2.1 7,729 + H281DRAFT_06566 0.81 -0.5 7,730 - H281DRAFT_06566 0.81 +0.3 7,730 - H281DRAFT_06566 0.81 +0.0 7,767 - H281DRAFT_06566 0.89 +1.0 7,864 + +0.5 7,865 - -0.5 7,873 - +1.2 8,031 + +0.5 8,031 + -0.5 8,032 - -0.3 8,032 - +1.1 8,032 - +0.1 8,045 + -0.1 8,073 + -1.7 8,135 - +0.1 8,135 - -0.8 8,136 + -0.0 8,170 + +1.0 8,240 + -0.4 8,240 + +0.2 8,241 - +0.4 8,363 + H281DRAFT_06567 0.13 +1.3 8,363 + H281DRAFT_06567 0.13 -0.3 8,511 + -0.2 8,511 + +0.6 8,531 + +0.8 8,531 + +0.6 8,535 + -0.0 8,535 + +1.0 8,535 + -0.5 8,535 + +0.2 8,536 - -0.1 8,536 - -0.5 8,536 - +0.2 8,536 - -1.1 8,536 - +0.6 8,536 - -0.3 8,544 - +0.6 8,562 + +0.2 8,562 + +0.5 8,563 - +1.1 8,563 - +2.0 8,617 + -0.0 8,617 + -1.4 8,617 + -0.5 8,618 - +0.0 8,618 - +0.4 8,689 - +0.7 8,788 + H281DRAFT_06568 0.32 +1.1 8,788 + H281DRAFT_06568 0.32 +0.0 8,793 + H281DRAFT_06568 0.34 +0.4 8,960 + +0.4 8,960 + -0.5 8,961 - +0.7 8,961 - -0.5 8,971 - +0.5 9,016 + -0.0 9,016 + +0.2 9,016 + -0.0 9,017 - +0.1 9,095 + +0.1 9,095 + -1.0 9,195 - +0.4 9,220 + -0.5 9,288 + -0.4 9,288 + -0.4 9,288 + -1.0 9,288 + -0.9 9,288 + +0.6 9,289 - -0.0 9,412 + +0.3 9,413 - -0.8 9,426 - -0.6 9,511 + +0.1 9,512 - +0.3 9,565 + +0.3 9,680 + +0.1 9,680 + -0.7 9,680 + +0.4 9,681 - -0.2 9,681 - -0.8 9,681 - +1.1 9,685 + -0.8 9,713 + +0.7 9,714 - +0.3 9,714 - -0.0 9,714 - +0.5 9,834 + +1.4 9,857 + +0.6
Or see this region's nucleotide sequence