Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_06252

Experiment: LB

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntH281DRAFT_06250 and H281DRAFT_06251 overlap by 4 nucleotidesH281DRAFT_06251 and H281DRAFT_06252 are separated by 31 nucleotidesH281DRAFT_06252 and H281DRAFT_06253 are separated by 124 nucleotides H281DRAFT_06250: H281DRAFT_06250 - hypothetical protein, at 33,119 to 33,988 _06250 H281DRAFT_06251: H281DRAFT_06251 - 8-oxo-dGTPase (EC 3.6.1.55), at 33,985 to 34,407 _06251 H281DRAFT_06252: H281DRAFT_06252 - hypothetical protein, at 34,439 to 34,636 _06252 H281DRAFT_06253: H281DRAFT_06253 - cell division protein ZapD, at 34,761 to 35,516 _06253 Position (kb) 34 35Strain fitness (log2 ratio) -2 -1 0 1 2at 33.443 kb on + strand, within H281DRAFT_06250at 33.587 kb on + strand, within H281DRAFT_06250at 33.587 kb on + strand, within H281DRAFT_06250at 33.650 kb on + strand, within H281DRAFT_06250at 33.650 kb on + strand, within H281DRAFT_06250at 33.687 kb on - strand, within H281DRAFT_06250at 33.687 kb on - strand, within H281DRAFT_06250at 33.707 kb on + strand, within H281DRAFT_06250at 33.707 kb on + strand, within H281DRAFT_06250at 33.707 kb on + strand, within H281DRAFT_06250at 33.707 kb on + strand, within H281DRAFT_06250at 33.708 kb on - strand, within H281DRAFT_06250at 33.708 kb on - strand, within H281DRAFT_06250at 33.708 kb on - strand, within H281DRAFT_06250at 33.708 kb on - strand, within H281DRAFT_06250at 33.709 kb on + strand, within H281DRAFT_06250at 33.709 kb on + strand, within H281DRAFT_06250at 33.709 kb on + strand, within H281DRAFT_06250at 33.709 kb on + strand, within H281DRAFT_06250at 33.709 kb on + strand, within H281DRAFT_06250at 33.709 kb on + strand, within H281DRAFT_06250at 33.710 kb on - strand, within H281DRAFT_06250at 33.710 kb on - strand, within H281DRAFT_06250at 33.710 kb on - strand, within H281DRAFT_06250at 33.710 kb on - strand, within H281DRAFT_06250at 33.800 kb on + strand, within H281DRAFT_06250at 33.822 kb on - strand, within H281DRAFT_06250at 33.822 kb on - strand, within H281DRAFT_06250at 33.822 kb on - strand, within H281DRAFT_06250at 34.109 kb on - strandat 34.128 kb on + strand, within H281DRAFT_06251at 34.175 kb on + strand, within H281DRAFT_06251at 34.175 kb on + strand, within H281DRAFT_06251at 34.222 kb on - strand, within H281DRAFT_06251at 34.238 kb on - strand, within H281DRAFT_06251at 34.249 kb on + strand, within H281DRAFT_06251at 34.249 kb on + strand, within H281DRAFT_06251at 34.249 kb on + strand, within H281DRAFT_06251at 34.249 kb on + strand, within H281DRAFT_06251at 34.249 kb on + strand, within H281DRAFT_06251at 34.250 kb on - strand, within H281DRAFT_06251at 34.250 kb on - strand, within H281DRAFT_06251at 34.250 kb on - strand, within H281DRAFT_06251at 34.250 kb on - strand, within H281DRAFT_06251at 34.250 kb on - strand, within H281DRAFT_06251at 34.250 kb on - strand, within H281DRAFT_06251at 34.453 kb on - strandat 34.509 kb on + strand, within H281DRAFT_06252at 34.636 kb on + strandat 34.637 kb on - strandat 34.654 kb on - strandat 34.654 kb on - strandat 34.675 kb on + strandat 34.677 kb on + strandat 34.698 kb on + strandat 34.762 kb on + strandat 34.762 kb on + strandat 34.762 kb on + strandat 34.763 kb on - strandat 34.763 kb on - strandat 34.858 kb on + strand, within H281DRAFT_06253at 34.858 kb on + strand, within H281DRAFT_06253at 34.858 kb on + strand, within H281DRAFT_06253at 34.858 kb on + strand, within H281DRAFT_06253at 34.858 kb on + strand, within H281DRAFT_06253at 34.859 kb on - strand, within H281DRAFT_06253at 34.859 kb on - strand, within H281DRAFT_06253at 34.859 kb on - strand, within H281DRAFT_06253at 34.859 kb on - strand, within H281DRAFT_06253at 34.925 kb on - strand, within H281DRAFT_06253at 34.952 kb on - strand, within H281DRAFT_06253at 34.952 kb on - strand, within H281DRAFT_06253at 34.971 kb on - strand, within H281DRAFT_06253at 35.105 kb on - strand, within H281DRAFT_06253at 35.107 kb on + strand, within H281DRAFT_06253at 35.108 kb on - strand, within H281DRAFT_06253at 35.472 kb on + strandat 35.473 kb on - strandat 35.501 kb on - strandat 35.506 kb on + strandat 35.507 kb on - strandat 35.563 kb on + strandat 35.564 kb on - strandat 35.578 kb on - strandat 35.583 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction LB
remove
33,443 + H281DRAFT_06250 0.37 -0.6
33,587 + H281DRAFT_06250 0.54 +0.2
33,587 + H281DRAFT_06250 0.54 +0.0
33,650 + H281DRAFT_06250 0.61 +0.0
33,650 + H281DRAFT_06250 0.61 -0.5
33,687 - H281DRAFT_06250 0.65 +0.3
33,687 - H281DRAFT_06250 0.65 +0.4
33,707 + H281DRAFT_06250 0.68 -0.3
33,707 + H281DRAFT_06250 0.68 -0.1
33,707 + H281DRAFT_06250 0.68 -0.2
33,707 + H281DRAFT_06250 0.68 -0.7
33,708 - H281DRAFT_06250 0.68 -0.2
33,708 - H281DRAFT_06250 0.68 -0.1
33,708 - H281DRAFT_06250 0.68 +0.8
33,708 - H281DRAFT_06250 0.68 +0.1
33,709 + H281DRAFT_06250 0.68 -0.6
33,709 + H281DRAFT_06250 0.68 +0.1
33,709 + H281DRAFT_06250 0.68 +0.7
33,709 + H281DRAFT_06250 0.68 -0.2
33,709 + H281DRAFT_06250 0.68 +0.6
33,709 + H281DRAFT_06250 0.68 -0.3
33,710 - H281DRAFT_06250 0.68 +0.4
33,710 - H281DRAFT_06250 0.68 +0.3
33,710 - H281DRAFT_06250 0.68 +0.5
33,710 - H281DRAFT_06250 0.68 +0.4
33,800 + H281DRAFT_06250 0.78 +0.1
33,822 - H281DRAFT_06250 0.81 +0.5
33,822 - H281DRAFT_06250 0.81 -0.3
33,822 - H281DRAFT_06250 0.81 +0.3
34,109 - +0.1
34,128 + H281DRAFT_06251 0.34 -0.1
34,175 + H281DRAFT_06251 0.45 +0.0
34,175 + H281DRAFT_06251 0.45 +0.3
34,222 - H281DRAFT_06251 0.56 +1.1
34,238 - H281DRAFT_06251 0.60 +0.2
34,249 + H281DRAFT_06251 0.62 +0.6
34,249 + H281DRAFT_06251 0.62 +0.2
34,249 + H281DRAFT_06251 0.62 -0.1
34,249 + H281DRAFT_06251 0.62 +0.4
34,249 + H281DRAFT_06251 0.62 -0.1
34,250 - H281DRAFT_06251 0.63 +0.6
34,250 - H281DRAFT_06251 0.63 +0.2
34,250 - H281DRAFT_06251 0.63 -0.4
34,250 - H281DRAFT_06251 0.63 -0.4
34,250 - H281DRAFT_06251 0.63 +0.4
34,250 - H281DRAFT_06251 0.63 +0.1
34,453 - -0.2
34,509 + H281DRAFT_06252 0.35 +1.7
34,636 + +0.9
34,637 - +0.1
34,654 - +0.2
34,654 - +1.4
34,675 + -0.2
34,677 + +0.3
34,698 + -0.1
34,762 + +0.4
34,762 + +0.0
34,762 + -0.7
34,763 - -0.2
34,763 - -0.1
34,858 + H281DRAFT_06253 0.13 -0.2
34,858 + H281DRAFT_06253 0.13 -0.2
34,858 + H281DRAFT_06253 0.13 -0.5
34,858 + H281DRAFT_06253 0.13 +1.2
34,858 + H281DRAFT_06253 0.13 +0.3
34,859 - H281DRAFT_06253 0.13 -0.9
34,859 - H281DRAFT_06253 0.13 -2.2
34,859 - H281DRAFT_06253 0.13 -0.4
34,859 - H281DRAFT_06253 0.13 +0.9
34,925 - H281DRAFT_06253 0.22 +0.4
34,952 - H281DRAFT_06253 0.25 +0.1
34,952 - H281DRAFT_06253 0.25 +0.6
34,971 - H281DRAFT_06253 0.28 +2.4
35,105 - H281DRAFT_06253 0.46 +1.3
35,107 + H281DRAFT_06253 0.46 -0.1
35,108 - H281DRAFT_06253 0.46 -0.1
35,472 + -0.5
35,473 - +0.6
35,501 - -0.5
35,506 + +0.5
35,507 - -0.0
35,563 + -0.3
35,564 - +0.5
35,578 - -0.6
35,583 - +0.2

Or see this region's nucleotide sequence