Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_05265 and H281DRAFT_05266 are separated by 400 nucleotides H281DRAFT_05266 and H281DRAFT_05267 are separated by 11 nucleotides H281DRAFT_05267 and H281DRAFT_05268 are separated by 171 nucleotides
H281DRAFT_05265: H281DRAFT_05265 - hypothetical protein, at 7,029 to 8,192
_05265
H281DRAFT_05266: H281DRAFT_05266 - hypothetical protein, at 8,593 to 8,931
_05266
H281DRAFT_05267: H281DRAFT_05267 - 3-hydroxypropanoate dehydrogenase, at 8,943 to 9,527
_05267
H281DRAFT_05268: H281DRAFT_05268 - Alkylated DNA repair dioxygenase AlkB, at 9,699 to 10,313
_05268
Position (kb)
8
9 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 8.101 kb on - strand at 8.170 kb on - strand at 8.192 kb on + strand at 8.193 kb on - strand at 8.284 kb on - strand at 8.484 kb on - strand at 8.723 kb on - strand, within H281DRAFT_05266 at 8.911 kb on + strand at 8.912 kb on - strand at 9.143 kb on - strand, within H281DRAFT_05267 at 9.154 kb on - strand, within H281DRAFT_05267 at 9.154 kb on - strand, within H281DRAFT_05267 at 9.476 kb on - strand at 9.476 kb on - strand at 9.531 kb on - strand at 9.583 kb on - strand at 9.648 kb on + strand at 9.649 kb on - strand at 9.651 kb on + strand at 9.652 kb on - strand at 9.699 kb on - strand at 9.699 kb on - strand at 9.710 kb on - strand at 9.821 kb on + strand, within H281DRAFT_05268 at 9.821 kb on + strand, within H281DRAFT_05268 at 9.831 kb on - strand, within H281DRAFT_05268 at 9.894 kb on + strand, within H281DRAFT_05268 at 9.894 kb on + strand, within H281DRAFT_05268 at 9.894 kb on + strand, within H281DRAFT_05268 at 9.894 kb on + strand, within H281DRAFT_05268 at 9.901 kb on - strand, within H281DRAFT_05268
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 8,101 - +0.2 8,170 - +0.5 8,192 + -0.2 8,193 - -0.0 8,284 - +0.1 8,484 - +0.4 8,723 - H281DRAFT_05266 0.38 +0.8 8,911 + -1.6 8,912 - -0.7 9,143 - H281DRAFT_05267 0.34 -0.5 9,154 - H281DRAFT_05267 0.36 -0.8 9,154 - H281DRAFT_05267 0.36 -2.2 9,476 - +0.3 9,476 - +0.2 9,531 - -0.0 9,583 - -0.8 9,648 + -0.5 9,649 - +0.8 9,651 + +0.5 9,652 - -0.2 9,699 - +0.1 9,699 - +0.2 9,710 - -0.8 9,821 + H281DRAFT_05268 0.20 -0.1 9,821 + H281DRAFT_05268 0.20 -0.1 9,831 - H281DRAFT_05268 0.21 +0.5 9,894 + H281DRAFT_05268 0.32 -0.4 9,894 + H281DRAFT_05268 0.32 -0.6 9,894 + H281DRAFT_05268 0.32 +1.8 9,894 + H281DRAFT_05268 0.32 +0.0 9,901 - H281DRAFT_05268 0.33 +0.3
Or see this region's nucleotide sequence