Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_05055

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_05053 and H281DRAFT_05054 are separated by 115 nucleotidesH281DRAFT_05054 and H281DRAFT_05055 are separated by 340 nucleotidesH281DRAFT_05055 and H281DRAFT_05056 are separated by 370 nucleotides H281DRAFT_05053: H281DRAFT_05053 - protein of unknown function (DUF3331), at 244,058 to 244,501 _05053 H281DRAFT_05054: H281DRAFT_05054 - Predicted periplasmic or secreted lipoprotein, at 244,617 to 245,000 _05054 H281DRAFT_05055: H281DRAFT_05055 - Signal transduction histidine kinase, at 245,341 to 246,396 _05055 H281DRAFT_05056: H281DRAFT_05056 - aldehyde dehydrogenase (NAD+), at 246,767 to 248,185 _05056 Position (kb) 245 246 247Strain fitness (log2 ratio) -1 0 1at 244.517 kb on - strandat 244.531 kb on + strandat 244.615 kb on + strandat 244.639 kb on - strandat 244.701 kb on - strand, within H281DRAFT_05054at 244.939 kb on + strand, within H281DRAFT_05054at 244.940 kb on - strand, within H281DRAFT_05054at 245.041 kb on - strandat 245.042 kb on + strandat 245.043 kb on - strandat 245.075 kb on + strandat 245.076 kb on - strandat 245.076 kb on - strandat 245.076 kb on - strandat 245.095 kb on - strandat 245.097 kb on + strandat 245.145 kb on + strandat 245.499 kb on - strand, within H281DRAFT_05055at 245.558 kb on - strand, within H281DRAFT_05055at 245.953 kb on + strand, within H281DRAFT_05055at 245.954 kb on - strand, within H281DRAFT_05055at 246.086 kb on - strand, within H281DRAFT_05055at 246.086 kb on - strand, within H281DRAFT_05055at 246.242 kb on + strand, within H281DRAFT_05055at 246.242 kb on + strand, within H281DRAFT_05055at 246.486 kb on + strandat 246.502 kb on + strandat 246.503 kb on - strandat 246.606 kb on + strandat 246.606 kb on + strandat 246.606 kb on + strandat 246.607 kb on - strandat 246.610 kb on + strandat 246.610 kb on + strandat 246.610 kb on + strandat 246.610 kb on + strandat 246.610 kb on + strandat 246.610 kb on + strandat 246.610 kb on + strandat 246.610 kb on + strandat 246.611 kb on - strandat 246.718 kb on + strandat 246.768 kb on + strandat 246.960 kb on + strand, within H281DRAFT_05056at 246.960 kb on + strand, within H281DRAFT_05056at 246.961 kb on - strand, within H281DRAFT_05056at 246.975 kb on + strand, within H281DRAFT_05056at 247.021 kb on - strand, within H281DRAFT_05056at 247.082 kb on + strand, within H281DRAFT_05056at 247.082 kb on + strand, within H281DRAFT_05056at 247.082 kb on + strand, within H281DRAFT_05056at 247.209 kb on + strand, within H281DRAFT_05056

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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244,517 - +0.2
244,531 + +0.1
244,615 + -0.3
244,639 - +1.3
244,701 - H281DRAFT_05054 0.22 +0.8
244,939 + H281DRAFT_05054 0.84 +0.5
244,940 - H281DRAFT_05054 0.84 -0.1
245,041 - -0.3
245,042 + -0.2
245,043 - -0.3
245,075 + -1.3
245,076 - -0.6
245,076 - -0.9
245,076 - +0.2
245,095 - -0.3
245,097 + -0.1
245,145 + +0.8
245,499 - H281DRAFT_05055 0.15 +0.4
245,558 - H281DRAFT_05055 0.21 +0.7
245,953 + H281DRAFT_05055 0.58 +0.4
245,954 - H281DRAFT_05055 0.58 -0.3
246,086 - H281DRAFT_05055 0.71 -0.3
246,086 - H281DRAFT_05055 0.71 +0.6
246,242 + H281DRAFT_05055 0.85 -0.9
246,242 + H281DRAFT_05055 0.85 -0.8
246,486 + -0.8
246,502 + -1.2
246,503 - -0.1
246,606 + +0.1
246,606 + +0.1
246,606 + +0.0
246,607 - -0.0
246,610 + +0.1
246,610 + -0.1
246,610 + +0.1
246,610 + -0.8
246,610 + -0.4
246,610 + +0.0
246,610 + +0.6
246,610 + +0.4
246,611 - +0.7
246,718 + +0.6
246,768 + +0.4
246,960 + H281DRAFT_05056 0.14 +0.8
246,960 + H281DRAFT_05056 0.14 -0.8
246,961 - H281DRAFT_05056 0.14 -0.2
246,975 + H281DRAFT_05056 0.15 -0.4
247,021 - H281DRAFT_05056 0.18 -0.5
247,082 + H281DRAFT_05056 0.22 -0.3
247,082 + H281DRAFT_05056 0.22 -1.3
247,082 + H281DRAFT_05056 0.22 -0.2
247,209 + H281DRAFT_05056 0.31 +0.2

Or see this region's nucleotide sequence