Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_04468

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_04467 and H281DRAFT_04468 are separated by 70 nucleotidesH281DRAFT_04468 and H281DRAFT_04469 are separated by 187 nucleotides H281DRAFT_04467: H281DRAFT_04467 - UDP-glucose pyrophosphorylase, at 190,907 to 191,788 _04467 H281DRAFT_04468: H281DRAFT_04468 - valyl-tRNA synthetase, at 191,859 to 194,738 _04468 H281DRAFT_04469: H281DRAFT_04469 - ATP-dependent DNA helicase UvrD, at 194,926 to 197,289 _04469 Position (kb) 191 192 193 194 195Strain fitness (log2 ratio) -1 0 1at 190.909 kb on - strandat 190.941 kb on + strandat 190.941 kb on + strandat 191.005 kb on - strand, within H281DRAFT_04467at 191.005 kb on - strand, within H281DRAFT_04467at 191.005 kb on - strand, within H281DRAFT_04467at 191.043 kb on + strand, within H281DRAFT_04467at 191.043 kb on + strand, within H281DRAFT_04467at 191.044 kb on - strand, within H281DRAFT_04467at 191.050 kb on - strand, within H281DRAFT_04467at 191.050 kb on - strand, within H281DRAFT_04467at 191.166 kb on + strand, within H281DRAFT_04467at 191.166 kb on + strand, within H281DRAFT_04467at 191.166 kb on + strand, within H281DRAFT_04467at 191.166 kb on + strand, within H281DRAFT_04467at 191.167 kb on - strand, within H281DRAFT_04467at 191.167 kb on - strand, within H281DRAFT_04467at 191.273 kb on - strand, within H281DRAFT_04467at 191.332 kb on - strand, within H281DRAFT_04467at 191.380 kb on - strand, within H281DRAFT_04467at 191.484 kb on + strand, within H281DRAFT_04467at 191.485 kb on - strand, within H281DRAFT_04467at 191.582 kb on - strand, within H281DRAFT_04467at 191.765 kb on + strandat 191.784 kb on - strandat 191.813 kb on + strandat 191.813 kb on + strandat 191.814 kb on - strandat 191.814 kb on - strandat 191.814 kb on - strandat 191.817 kb on + strandat 191.817 kb on + strandat 191.817 kb on + strandat 191.818 kb on - strandat 194.777 kb on + strandat 194.891 kb on + strandat 194.892 kb on - strandat 194.892 kb on - strandat 194.892 kb on - strandat 194.892 kb on - strandat 194.893 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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190,909 - +0.0
190,941 + -0.5
190,941 + +1.2
191,005 - H281DRAFT_04467 0.11 +0.8
191,005 - H281DRAFT_04467 0.11 -0.2
191,005 - H281DRAFT_04467 0.11 +0.3
191,043 + H281DRAFT_04467 0.15 +0.0
191,043 + H281DRAFT_04467 0.15 +0.1
191,044 - H281DRAFT_04467 0.16 +0.1
191,050 - H281DRAFT_04467 0.16 -0.2
191,050 - H281DRAFT_04467 0.16 +1.0
191,166 + H281DRAFT_04467 0.29 -0.5
191,166 + H281DRAFT_04467 0.29 -0.1
191,166 + H281DRAFT_04467 0.29 -0.3
191,166 + H281DRAFT_04467 0.29 +0.3
191,167 - H281DRAFT_04467 0.29 -0.6
191,167 - H281DRAFT_04467 0.29 +0.5
191,273 - H281DRAFT_04467 0.41 -0.3
191,332 - H281DRAFT_04467 0.48 -0.2
191,380 - H281DRAFT_04467 0.54 +0.6
191,484 + H281DRAFT_04467 0.65 -0.5
191,485 - H281DRAFT_04467 0.66 -0.5
191,582 - H281DRAFT_04467 0.77 +0.1
191,765 + -0.0
191,784 - +0.3
191,813 + -0.5
191,813 + +0.7
191,814 - +0.7
191,814 - +0.2
191,814 - -0.1
191,817 + -0.3
191,817 + -0.2
191,817 + +0.3
191,818 - -0.2
194,777 + +0.6
194,891 + +1.0
194,892 - +0.3
194,892 - +0.3
194,892 - -0.0
194,892 - -0.7
194,893 + +0.8

Or see this region's nucleotide sequence