Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_03947

Experiment: LB

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntH281DRAFT_03945 and H281DRAFT_03946 overlap by 4 nucleotidesH281DRAFT_03946 and H281DRAFT_03947 are separated by 87 nucleotidesH281DRAFT_03947 and H281DRAFT_03948 are separated by 112 nucleotides H281DRAFT_03945: H281DRAFT_03945 - cobalt-zinc-cadmium efflux system protein, at 47,090 to 48,382 _03945 H281DRAFT_03946: H281DRAFT_03946 - transcriptional regulator, ArsR family, at 48,379 to 48,747 _03946 H281DRAFT_03947: H281DRAFT_03947 - Tetratricopeptide repeat-containing protein, at 48,835 to 50,718 _03947 H281DRAFT_03948: H281DRAFT_03948 - metabolite-proton symporter, at 50,831 to 52,132 _03948 Position (kb) 48 49 50 51Strain fitness (log2 ratio) -2 -1 0 1at 47.898 kb on + strand, within H281DRAFT_03945at 47.899 kb on - strand, within H281DRAFT_03945at 47.899 kb on - strand, within H281DRAFT_03945at 47.899 kb on - strand, within H281DRAFT_03945at 47.899 kb on - strand, within H281DRAFT_03945at 47.901 kb on - strand, within H281DRAFT_03945at 47.901 kb on - strand, within H281DRAFT_03945at 47.901 kb on - strand, within H281DRAFT_03945at 47.901 kb on - strand, within H281DRAFT_03945at 48.249 kb on - strand, within H281DRAFT_03945at 48.322 kb on + strandat 48.473 kb on + strand, within H281DRAFT_03946at 48.474 kb on - strand, within H281DRAFT_03946at 48.474 kb on - strand, within H281DRAFT_03946at 48.858 kb on + strandat 48.881 kb on + strandat 49.158 kb on + strand, within H281DRAFT_03947at 49.159 kb on - strand, within H281DRAFT_03947at 49.189 kb on + strand, within H281DRAFT_03947at 49.189 kb on + strand, within H281DRAFT_03947at 49.189 kb on + strand, within H281DRAFT_03947at 49.189 kb on + strand, within H281DRAFT_03947at 49.190 kb on - strand, within H281DRAFT_03947at 49.190 kb on - strand, within H281DRAFT_03947at 49.190 kb on - strand, within H281DRAFT_03947at 49.801 kb on - strand, within H281DRAFT_03947at 49.801 kb on - strand, within H281DRAFT_03947at 49.974 kb on + strand, within H281DRAFT_03947at 49.975 kb on - strand, within H281DRAFT_03947at 50.040 kb on - strand, within H281DRAFT_03947at 50.040 kb on - strand, within H281DRAFT_03947at 50.203 kb on + strand, within H281DRAFT_03947at 50.204 kb on - strand, within H281DRAFT_03947at 50.354 kb on + strand, within H281DRAFT_03947at 50.385 kb on + strand, within H281DRAFT_03947at 50.386 kb on - strand, within H281DRAFT_03947at 50.386 kb on - strand, within H281DRAFT_03947at 50.740 kb on - strandat 50.844 kb on + strandat 50.844 kb on + strandat 50.872 kb on - strandat 51.084 kb on + strand, within H281DRAFT_03948at 51.084 kb on + strand, within H281DRAFT_03948at 51.084 kb on + strand, within H281DRAFT_03948at 51.085 kb on - strand, within H281DRAFT_03948at 51.085 kb on - strand, within H281DRAFT_03948at 51.348 kb on + strand, within H281DRAFT_03948at 51.364 kb on - strand, within H281DRAFT_03948at 51.364 kb on - strand, within H281DRAFT_03948at 51.666 kb on + strand, within H281DRAFT_03948at 51.666 kb on + strand, within H281DRAFT_03948at 51.705 kb on + strand, within H281DRAFT_03948at 51.705 kb on + strand, within H281DRAFT_03948at 51.705 kb on + strand, within H281DRAFT_03948at 51.705 kb on + strand, within H281DRAFT_03948at 51.706 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction LB
remove
47,898 + H281DRAFT_03945 0.62 -0.1
47,899 - H281DRAFT_03945 0.63 -0.3
47,899 - H281DRAFT_03945 0.63 +0.5
47,899 - H281DRAFT_03945 0.63 +0.1
47,899 - H281DRAFT_03945 0.63 -0.4
47,901 - H281DRAFT_03945 0.63 -0.1
47,901 - H281DRAFT_03945 0.63 -1.0
47,901 - H281DRAFT_03945 0.63 +1.1
47,901 - H281DRAFT_03945 0.63 +0.1
48,249 - H281DRAFT_03945 0.90 -0.2
48,322 + -0.2
48,473 + H281DRAFT_03946 0.25 +0.5
48,474 - H281DRAFT_03946 0.26 -0.6
48,474 - H281DRAFT_03946 0.26 -0.6
48,858 + -0.3
48,881 + +0.4
49,158 + H281DRAFT_03947 0.17 -0.3
49,159 - H281DRAFT_03947 0.17 +0.2
49,189 + H281DRAFT_03947 0.19 +0.9
49,189 + H281DRAFT_03947 0.19 -0.3
49,189 + H281DRAFT_03947 0.19 -0.2
49,189 + H281DRAFT_03947 0.19 -0.8
49,190 - H281DRAFT_03947 0.19 +1.6
49,190 - H281DRAFT_03947 0.19 +0.1
49,190 - H281DRAFT_03947 0.19 -1.2
49,801 - H281DRAFT_03947 0.51 +0.4
49,801 - H281DRAFT_03947 0.51 +0.7
49,974 + H281DRAFT_03947 0.60 -0.6
49,975 - H281DRAFT_03947 0.61 -0.1
50,040 - H281DRAFT_03947 0.64 +0.4
50,040 - H281DRAFT_03947 0.64 +0.4
50,203 + H281DRAFT_03947 0.73 -0.1
50,204 - H281DRAFT_03947 0.73 +1.0
50,354 + H281DRAFT_03947 0.81 -0.1
50,385 + H281DRAFT_03947 0.82 -1.3
50,386 - H281DRAFT_03947 0.82 -0.3
50,386 - H281DRAFT_03947 0.82 -0.7
50,740 - -0.8
50,844 + +0.2
50,844 + +0.4
50,872 - +0.3
51,084 + H281DRAFT_03948 0.19 -1.8
51,084 + H281DRAFT_03948 0.19 -0.1
51,084 + H281DRAFT_03948 0.19 -0.4
51,085 - H281DRAFT_03948 0.20 +0.4
51,085 - H281DRAFT_03948 0.20 +0.0
51,348 + H281DRAFT_03948 0.40 +0.1
51,364 - H281DRAFT_03948 0.41 -0.0
51,364 - H281DRAFT_03948 0.41 -0.0
51,666 + H281DRAFT_03948 0.64 -0.2
51,666 + H281DRAFT_03948 0.64 +0.5
51,705 + H281DRAFT_03948 0.67 +0.4
51,705 + H281DRAFT_03948 0.67 -0.1
51,705 + H281DRAFT_03948 0.67 -0.2
51,705 + H281DRAFT_03948 0.67 -0.2
51,706 - +1.7

Or see this region's nucleotide sequence