Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_03248 and H281DRAFT_03249 are separated by 55 nucleotides H281DRAFT_03249 and H281DRAFT_03250 are separated by 23 nucleotides H281DRAFT_03250 and H281DRAFT_03251 overlap by 4 nucleotides H281DRAFT_03251 and H281DRAFT_03252 are separated by 99 nucleotides
H281DRAFT_03248: H281DRAFT_03248 - Tetratricopeptide (TPR) repeat, at 305,424 to 307,574
_03248
H281DRAFT_03249: H281DRAFT_03249 - hypothetical protein, at 307,630 to 308,046
_03249
H281DRAFT_03250: H281DRAFT_03250 - Uncharacterized conserved protein YndB, AHSA1/START domain, at 308,070 to 308,597
_03250
H281DRAFT_03251: H281DRAFT_03251 - transcriptional regulator, ArsR family, at 308,594 to 308,929
_03251
H281DRAFT_03252: H281DRAFT_03252 - 2,4-dihydroxyhept-2-enedioate aldolase (EC 4.1.2.-), at 309,029 to 309,832
_03252
Position (kb) 307
308
309 Strain fitness (log2 ratio) -1
0
1
2 at 306.804 kb on - strand, within H281DRAFT_03248 at 306.823 kb on - strand, within H281DRAFT_03248 at 306.888 kb on - strand, within H281DRAFT_03248 at 307.117 kb on + strand, within H281DRAFT_03248 at 307.199 kb on - strand, within H281DRAFT_03248 at 307.468 kb on - strand at 307.842 kb on - strand, within H281DRAFT_03249 at 308.248 kb on - strand, within H281DRAFT_03250 at 308.930 kb on - strand at 309.030 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 306,804 - H281DRAFT_03248 0.64 +0.3 306,823 - H281DRAFT_03248 0.65 +0.0 306,888 - H281DRAFT_03248 0.68 +0.6 307,117 + H281DRAFT_03248 0.79 +0.1 307,199 - H281DRAFT_03248 0.83 -0.4 307,468 - -0.2 307,842 - H281DRAFT_03249 0.51 +1.9 308,248 - H281DRAFT_03250 0.34 +1.4 308,930 - +0.0 309,030 + -0.1
Or see this region's nucleotide sequence