Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_03119

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_03118 and H281DRAFT_03119 overlap by 4 nucleotidesH281DRAFT_03119 and H281DRAFT_03120 are separated by 23 nucleotidesH281DRAFT_03120 and H281DRAFT_03121 are separated by 27 nucleotides H281DRAFT_03118: H281DRAFT_03118 - NADPH-dependent 2,4-dienoyl-CoA reductase, sulfur reductase, at 151,204 to 152,637 _03118 H281DRAFT_03119: H281DRAFT_03119 - NADH dehydrogenase/NADH:ubiquinone oxidoreductase 75 kD subunit (chain G), at 152,634 to 153,002 _03119 H281DRAFT_03120: H281DRAFT_03120 - putative spermidine/putrescine transport system permease protein, at 153,026 to 153,820 _03120 H281DRAFT_03121: H281DRAFT_03121 - putative spermidine/putrescine transport system permease protein, at 153,848 to 154,762 _03121 Position (kb) 152 153 154Strain fitness (log2 ratio) -1 0 1at 152.009 kb on + strand, within H281DRAFT_03118at 152.230 kb on - strand, within H281DRAFT_03118at 153.158 kb on - strand, within H281DRAFT_03120at 153.158 kb on - strand, within H281DRAFT_03120at 153.160 kb on - strand, within H281DRAFT_03120at 153.397 kb on + strand, within H281DRAFT_03120at 153.867 kb on + strandat 153.867 kb on + strandat 153.891 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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152,009 + H281DRAFT_03118 0.56 +0.6
152,230 - H281DRAFT_03118 0.72 +0.8
153,158 - H281DRAFT_03120 0.17 -0.1
153,158 - H281DRAFT_03120 0.17 -0.2
153,160 - H281DRAFT_03120 0.17 -0.9
153,397 + H281DRAFT_03120 0.47 +1.1
153,867 + -0.1
153,867 + -0.1
153,891 + -0.2

Or see this region's nucleotide sequence