Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_02309 and H281DRAFT_02310 are separated by 111 nucleotides H281DRAFT_02310 and H281DRAFT_02311 are separated by 28 nucleotides H281DRAFT_02311 and H281DRAFT_02312 are separated by 2 nucleotides
H281DRAFT_02309: H281DRAFT_02309 - Zn-binding Pro-Ala-Ala-Arg (PAAR) domain-containing protein, incolved in TypeVI secretion, at 459,902 to 460,189
_02309
H281DRAFT_02310: H281DRAFT_02310 - hypothetical protein, at 460,301 to 461,080
_02310
H281DRAFT_02311: H281DRAFT_02311 - hypothetical protein, at 461,109 to 462,521
_02311
H281DRAFT_02312: H281DRAFT_02312 - type VI secretion system secreted protein VgrG, at 462,524 to 465,202
_02312
Position (kb) 461
462
463 Strain fitness (log2 ratio) -2
-1
0
1
2 at 460.177 kb on + strand at 460.177 kb on + strand at 460.177 kb on + strand at 460.177 kb on + strand at 460.178 kb on - strand at 460.178 kb on - strand at 460.193 kb on + strand at 460.193 kb on + strand at 460.193 kb on + strand at 460.194 kb on - strand at 460.194 kb on - strand at 460.194 kb on - strand at 460.195 kb on + strand at 460.195 kb on + strand at 460.195 kb on + strand at 460.195 kb on + strand at 460.196 kb on - strand at 460.284 kb on + strand at 460.284 kb on + strand at 460.284 kb on + strand at 460.284 kb on + strand at 460.284 kb on + strand at 460.284 kb on + strand at 460.284 kb on + strand at 460.285 kb on - strand at 460.285 kb on - strand at 460.302 kb on + strand at 461.119 kb on + strand at 461.119 kb on + strand at 461.119 kb on + strand at 461.119 kb on + strand at 461.119 kb on + strand at 461.120 kb on - strand at 461.120 kb on - strand at 461.120 kb on - strand at 461.120 kb on - strand at 461.120 kb on - strand at 461.120 kb on - strand at 461.120 kb on - strand at 461.140 kb on + strand at 461.140 kb on + strand at 461.140 kb on + strand at 461.140 kb on + strand at 461.141 kb on - strand at 461.167 kb on + strand at 461.295 kb on + strand, within H281DRAFT_02311 at 461.295 kb on + strand, within H281DRAFT_02311 at 461.295 kb on + strand, within H281DRAFT_02311 at 461.296 kb on - strand, within H281DRAFT_02311 at 461.296 kb on - strand, within H281DRAFT_02311 at 461.296 kb on - strand, within H281DRAFT_02311 at 461.298 kb on + strand, within H281DRAFT_02311 at 461.363 kb on + strand, within H281DRAFT_02311 at 461.363 kb on + strand, within H281DRAFT_02311 at 461.363 kb on + strand, within H281DRAFT_02311 at 461.364 kb on - strand, within H281DRAFT_02311 at 461.364 kb on - strand, within H281DRAFT_02311 at 461.364 kb on - strand, within H281DRAFT_02311 at 461.470 kb on + strand, within H281DRAFT_02311 at 461.471 kb on - strand, within H281DRAFT_02311 at 461.493 kb on - strand, within H281DRAFT_02311 at 461.657 kb on + strand, within H281DRAFT_02311 at 461.657 kb on + strand, within H281DRAFT_02311 at 461.657 kb on + strand, within H281DRAFT_02311 at 461.689 kb on + strand, within H281DRAFT_02311 at 461.689 kb on + strand, within H281DRAFT_02311 at 461.689 kb on + strand, within H281DRAFT_02311 at 461.689 kb on + strand, within H281DRAFT_02311 at 461.689 kb on + strand, within H281DRAFT_02311 at 461.689 kb on + strand, within H281DRAFT_02311 at 461.690 kb on - strand, within H281DRAFT_02311 at 461.690 kb on - strand, within H281DRAFT_02311 at 461.690 kb on - strand, within H281DRAFT_02311 at 461.728 kb on - strand at 461.728 kb on - strand, within H281DRAFT_02311 at 461.728 kb on - strand, within H281DRAFT_02311 at 461.808 kb on + strand, within H281DRAFT_02311 at 461.808 kb on + strand, within H281DRAFT_02311 at 461.808 kb on + strand, within H281DRAFT_02311 at 461.809 kb on - strand, within H281DRAFT_02311 at 461.812 kb on - strand, within H281DRAFT_02311 at 461.837 kb on + strand, within H281DRAFT_02311 at 461.837 kb on + strand, within H281DRAFT_02311 at 461.837 kb on + strand, within H281DRAFT_02311 at 461.838 kb on - strand, within H281DRAFT_02311 at 461.838 kb on - strand, within H281DRAFT_02311 at 461.838 kb on - strand, within H281DRAFT_02311 at 461.838 kb on - strand, within H281DRAFT_02311 at 461.844 kb on + strand, within H281DRAFT_02311 at 461.844 kb on + strand, within H281DRAFT_02311 at 461.845 kb on - strand, within H281DRAFT_02311 at 461.845 kb on - strand, within H281DRAFT_02311 at 461.845 kb on - strand, within H281DRAFT_02311 at 461.852 kb on + strand, within H281DRAFT_02311 at 461.852 kb on + strand, within H281DRAFT_02311 at 461.852 kb on + strand, within H281DRAFT_02311 at 462.037 kb on + strand, within H281DRAFT_02311 at 462.037 kb on + strand, within H281DRAFT_02311 at 462.038 kb on - strand, within H281DRAFT_02311 at 462.038 kb on - strand, within H281DRAFT_02311 at 462.061 kb on + strand, within H281DRAFT_02311 at 462.061 kb on + strand, within H281DRAFT_02311 at 462.062 kb on - strand at 462.062 kb on - strand, within H281DRAFT_02311 at 462.062 kb on - strand, within H281DRAFT_02311 at 462.083 kb on + strand, within H281DRAFT_02311 at 462.083 kb on + strand, within H281DRAFT_02311 at 462.084 kb on - strand, within H281DRAFT_02311 at 462.186 kb on - strand, within H281DRAFT_02311 at 462.193 kb on - strand, within H281DRAFT_02311 at 462.214 kb on + strand, within H281DRAFT_02311 at 462.214 kb on + strand, within H281DRAFT_02311 at 462.214 kb on + strand, within H281DRAFT_02311 at 462.215 kb on - strand, within H281DRAFT_02311 at 462.215 kb on - strand, within H281DRAFT_02311 at 462.215 kb on - strand, within H281DRAFT_02311 at 462.246 kb on + strand, within H281DRAFT_02311 at 462.247 kb on - strand, within H281DRAFT_02311 at 462.286 kb on + strand, within H281DRAFT_02311 at 462.287 kb on - strand, within H281DRAFT_02311 at 462.287 kb on - strand, within H281DRAFT_02311 at 462.343 kb on + strand, within H281DRAFT_02311 at 462.343 kb on + strand, within H281DRAFT_02311 at 462.343 kb on + strand, within H281DRAFT_02311 at 462.344 kb on - strand, within H281DRAFT_02311 at 462.368 kb on + strand, within H281DRAFT_02311 at 462.368 kb on + strand, within H281DRAFT_02311 at 462.373 kb on + strand, within H281DRAFT_02311 at 462.373 kb on + strand, within H281DRAFT_02311 at 462.373 kb on + strand, within H281DRAFT_02311 at 462.373 kb on + strand, within H281DRAFT_02311 at 462.373 kb on + strand, within H281DRAFT_02311 at 462.373 kb on + strand, within H281DRAFT_02311 at 462.374 kb on - strand, within H281DRAFT_02311 at 462.374 kb on - strand, within H281DRAFT_02311 at 462.374 kb on - strand, within H281DRAFT_02311 at 462.374 kb on - strand, within H281DRAFT_02311 at 462.374 kb on - strand, within H281DRAFT_02311 at 462.374 kb on - strand, within H281DRAFT_02311 at 462.374 kb on - strand, within H281DRAFT_02311 at 462.374 kb on - strand, within H281DRAFT_02311 at 462.374 kb on - strand at 462.374 kb on - strand, within H281DRAFT_02311 at 462.374 kb on - strand, within H281DRAFT_02311 at 462.374 kb on - strand, within H281DRAFT_02311 at 462.374 kb on - strand, within H281DRAFT_02311 at 462.494 kb on + strand at 462.495 kb on - strand at 462.495 kb on - strand at 462.495 kb on - strand at 462.495 kb on - strand at 462.525 kb on + strand at 462.616 kb on + strand at 462.616 kb on + strand at 462.616 kb on + strand at 462.616 kb on + strand at 462.617 kb on - strand at 462.685 kb on + strand at 462.685 kb on + strand at 462.685 kb on + strand at 462.687 kb on + strand at 462.687 kb on + strand at 462.688 kb on - strand at 462.688 kb on - strand at 462.688 kb on - strand at 462.726 kb on + strand at 462.726 kb on + strand at 462.726 kb on + strand at 462.727 kb on - strand at 462.727 kb on - strand at 462.727 kb on - strand at 462.727 kb on - strand at 462.727 kb on - strand at 462.727 kb on - strand at 462.770 kb on - strand at 462.830 kb on - strand, within H281DRAFT_02312 at 462.830 kb on - strand, within H281DRAFT_02312 at 462.831 kb on + strand, within H281DRAFT_02312 at 462.831 kb on + strand, within H281DRAFT_02312 at 462.831 kb on + strand, within H281DRAFT_02312 at 462.831 kb on + strand, within H281DRAFT_02312 at 462.831 kb on + strand, within H281DRAFT_02312 at 462.832 kb on - strand, within H281DRAFT_02312 at 462.832 kb on - strand, within H281DRAFT_02312 at 462.832 kb on - strand, within H281DRAFT_02312 at 462.832 kb on - strand, within H281DRAFT_02312 at 462.832 kb on - strand, within H281DRAFT_02312 at 462.832 kb on - strand, within H281DRAFT_02312 at 462.832 kb on - strand, within H281DRAFT_02312 at 462.832 kb on - strand, within H281DRAFT_02312 at 462.832 kb on - strand, within H281DRAFT_02312 at 462.832 kb on - strand, within H281DRAFT_02312 at 462.847 kb on + strand, within H281DRAFT_02312 at 462.847 kb on + strand, within H281DRAFT_02312 at 462.847 kb on + strand, within H281DRAFT_02312 at 462.848 kb on - strand, within H281DRAFT_02312 at 462.899 kb on + strand, within H281DRAFT_02312 at 462.900 kb on - strand, within H281DRAFT_02312 at 462.900 kb on - strand, within H281DRAFT_02312 at 462.900 kb on - strand, within H281DRAFT_02312 at 462.934 kb on + strand, within H281DRAFT_02312 at 462.934 kb on + strand, within H281DRAFT_02312 at 462.934 kb on + strand, within H281DRAFT_02312 at 462.935 kb on - strand, within H281DRAFT_02312 at 462.935 kb on - strand, within H281DRAFT_02312 at 462.935 kb on - strand, within H281DRAFT_02312 at 463.055 kb on - strand, within H281DRAFT_02312 at 463.352 kb on + strand, within H281DRAFT_02312 at 463.352 kb on + strand, within H281DRAFT_02312 at 463.352 kb on + strand, within H281DRAFT_02312 at 463.353 kb on - strand, within H281DRAFT_02312 at 463.353 kb on - strand, within H281DRAFT_02312 at 463.353 kb on - strand at 463.406 kb on - strand, within H281DRAFT_02312 at 463.406 kb on - strand, within H281DRAFT_02312 at 463.406 kb on - strand, within H281DRAFT_02312 at 463.422 kb on + strand, within H281DRAFT_02312 at 463.422 kb on + strand, within H281DRAFT_02312 at 463.422 kb on + strand, within H281DRAFT_02312 at 463.422 kb on + strand, within H281DRAFT_02312 at 463.423 kb on - strand, within H281DRAFT_02312 at 463.423 kb on - strand, within H281DRAFT_02312 at 463.423 kb on - strand, within H281DRAFT_02312 at 463.423 kb on - strand, within H281DRAFT_02312 at 463.423 kb on - strand, within H281DRAFT_02312 at 463.423 kb on - strand, within H281DRAFT_02312 at 463.453 kb on - strand, within H281DRAFT_02312 at 463.453 kb on - strand, within H281DRAFT_02312 at 463.488 kb on + strand, within H281DRAFT_02312 at 463.489 kb on - strand, within H281DRAFT_02312 at 463.489 kb on - strand, within H281DRAFT_02312 at 463.489 kb on - strand, within H281DRAFT_02312
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 460,177 + -1.3 460,177 + +1.2 460,177 + -0.0 460,177 + +0.3 460,178 - -0.5 460,178 - +0.5 460,193 + -0.4 460,193 + +0.2 460,193 + -1.5 460,194 - +0.2 460,194 - -0.1 460,194 - -2.2 460,195 + -0.2 460,195 + +0.2 460,195 + -0.1 460,195 + +0.4 460,196 - -0.6 460,284 + -0.2 460,284 + -1.0 460,284 + +0.7 460,284 + +1.0 460,284 + -0.0 460,284 + +0.6 460,284 + +0.5 460,285 - -0.7 460,285 - -0.6 460,302 + +0.3 461,119 + +0.3 461,119 + -0.2 461,119 + -0.4 461,119 + +0.6 461,119 + +0.6 461,120 - -0.1 461,120 - +0.2 461,120 - +0.1 461,120 - -0.8 461,120 - -0.0 461,120 - +0.3 461,120 - +0.5 461,140 + +0.2 461,140 + +0.2 461,140 + +0.4 461,140 + +0.1 461,141 - -0.1 461,167 + -0.3 461,295 + H281DRAFT_02311 0.13 +0.2 461,295 + H281DRAFT_02311 0.13 +0.4 461,295 + H281DRAFT_02311 0.13 -0.1 461,296 - H281DRAFT_02311 0.13 -0.1 461,296 - H281DRAFT_02311 0.13 +2.0 461,296 - H281DRAFT_02311 0.13 -0.1 461,298 + H281DRAFT_02311 0.13 -0.2 461,363 + H281DRAFT_02311 0.18 +0.5 461,363 + H281DRAFT_02311 0.18 -0.1 461,363 + H281DRAFT_02311 0.18 +0.5 461,364 - H281DRAFT_02311 0.18 +0.3 461,364 - H281DRAFT_02311 0.18 +0.4 461,364 - H281DRAFT_02311 0.18 -0.0 461,470 + H281DRAFT_02311 0.26 +0.2 461,471 - H281DRAFT_02311 0.26 -0.0 461,493 - H281DRAFT_02311 0.27 -0.0 461,657 + H281DRAFT_02311 0.39 +0.2 461,657 + H281DRAFT_02311 0.39 -0.1 461,657 + H281DRAFT_02311 0.39 -0.1 461,689 + H281DRAFT_02311 0.41 -0.4 461,689 + H281DRAFT_02311 0.41 +0.2 461,689 + H281DRAFT_02311 0.41 -0.1 461,689 + H281DRAFT_02311 0.41 +0.3 461,689 + H281DRAFT_02311 0.41 +0.4 461,689 + H281DRAFT_02311 0.41 +0.3 461,690 - H281DRAFT_02311 0.41 -0.0 461,690 - H281DRAFT_02311 0.41 +0.1 461,690 - H281DRAFT_02311 0.41 +0.3 461,728 - +0.4 461,728 - H281DRAFT_02311 0.44 +0.3 461,728 - H281DRAFT_02311 0.44 +0.1 461,808 + H281DRAFT_02311 0.49 -0.0 461,808 + H281DRAFT_02311 0.49 +0.2 461,808 + H281DRAFT_02311 0.49 +0.2 461,809 - H281DRAFT_02311 0.50 -0.9 461,812 - H281DRAFT_02311 0.50 +0.7 461,837 + H281DRAFT_02311 0.52 +0.3 461,837 + H281DRAFT_02311 0.52 +0.4 461,837 + H281DRAFT_02311 0.52 -0.1 461,838 - H281DRAFT_02311 0.52 -0.1 461,838 - H281DRAFT_02311 0.52 -0.1 461,838 - H281DRAFT_02311 0.52 -0.3 461,838 - H281DRAFT_02311 0.52 -0.4 461,844 + H281DRAFT_02311 0.52 +0.3 461,844 + H281DRAFT_02311 0.52 -0.4 461,845 - H281DRAFT_02311 0.52 +1.1 461,845 - H281DRAFT_02311 0.52 +0.1 461,845 - H281DRAFT_02311 0.52 +0.0 461,852 + H281DRAFT_02311 0.53 +1.3 461,852 + H281DRAFT_02311 0.53 +0.4 461,852 + H281DRAFT_02311 0.53 -0.1 462,037 + H281DRAFT_02311 0.66 -0.1 462,037 + H281DRAFT_02311 0.66 -1.3 462,038 - H281DRAFT_02311 0.66 -0.5 462,038 - H281DRAFT_02311 0.66 +0.0 462,061 + H281DRAFT_02311 0.67 -0.0 462,061 + H281DRAFT_02311 0.67 +1.6 462,062 - +1.3 462,062 - H281DRAFT_02311 0.67 +0.7 462,062 - H281DRAFT_02311 0.67 -0.3 462,083 + H281DRAFT_02311 0.69 +0.9 462,083 + H281DRAFT_02311 0.69 +0.5 462,084 - H281DRAFT_02311 0.69 +0.1 462,186 - H281DRAFT_02311 0.76 +0.0 462,193 - H281DRAFT_02311 0.77 -0.4 462,214 + H281DRAFT_02311 0.78 +0.0 462,214 + H281DRAFT_02311 0.78 +0.2 462,214 + H281DRAFT_02311 0.78 +0.3 462,215 - H281DRAFT_02311 0.78 +0.1 462,215 - H281DRAFT_02311 0.78 -0.8 462,215 - H281DRAFT_02311 0.78 +0.5 462,246 + H281DRAFT_02311 0.80 +0.7 462,247 - H281DRAFT_02311 0.81 +0.0 462,286 + H281DRAFT_02311 0.83 +0.5 462,287 - H281DRAFT_02311 0.83 -0.0 462,287 - H281DRAFT_02311 0.83 +0.2 462,343 + H281DRAFT_02311 0.87 -1.2 462,343 + H281DRAFT_02311 0.87 -0.3 462,343 + H281DRAFT_02311 0.87 -0.2 462,344 - H281DRAFT_02311 0.87 -0.2 462,368 + H281DRAFT_02311 0.89 -0.4 462,368 + H281DRAFT_02311 0.89 -0.3 462,373 + H281DRAFT_02311 0.89 +1.5 462,373 + H281DRAFT_02311 0.89 +0.0 462,373 + H281DRAFT_02311 0.89 +0.5 462,373 + H281DRAFT_02311 0.89 -0.0 462,373 + H281DRAFT_02311 0.89 +0.7 462,373 + H281DRAFT_02311 0.89 +0.1 462,374 - H281DRAFT_02311 0.90 -0.0 462,374 - H281DRAFT_02311 0.90 +0.2 462,374 - H281DRAFT_02311 0.90 -0.2 462,374 - H281DRAFT_02311 0.90 -0.7 462,374 - H281DRAFT_02311 0.90 +0.5 462,374 - H281DRAFT_02311 0.90 -0.3 462,374 - H281DRAFT_02311 0.90 +0.2 462,374 - H281DRAFT_02311 0.90 -0.1 462,374 - +1.0 462,374 - H281DRAFT_02311 0.90 -0.1 462,374 - H281DRAFT_02311 0.90 +0.1 462,374 - H281DRAFT_02311 0.90 +0.4 462,374 - H281DRAFT_02311 0.90 +0.1 462,494 + +0.5 462,495 - -0.0 462,495 - -0.9 462,495 - +0.3 462,495 - -0.9 462,525 + -0.0 462,616 + +0.9 462,616 + +0.6 462,616 + +0.2 462,616 + +0.7 462,617 - +0.2 462,685 + +0.4 462,685 + +0.0 462,685 + +0.6 462,687 + +2.6 462,687 + +0.4 462,688 - -0.1 462,688 - -0.3 462,688 - +0.1 462,726 + -0.1 462,726 + +0.2 462,726 + -0.0 462,727 - -0.2 462,727 - +1.0 462,727 - -0.1 462,727 - -0.6 462,727 - -2.7 462,727 - +0.3 462,770 - -0.1 462,830 - H281DRAFT_02312 0.11 +0.3 462,830 - H281DRAFT_02312 0.11 -0.7 462,831 + H281DRAFT_02312 0.11 -0.2 462,831 + H281DRAFT_02312 0.11 +0.5 462,831 + H281DRAFT_02312 0.11 +0.3 462,831 + H281DRAFT_02312 0.11 +1.0 462,831 + H281DRAFT_02312 0.11 -0.2 462,832 - H281DRAFT_02312 0.11 +0.8 462,832 - H281DRAFT_02312 0.11 -0.0 462,832 - H281DRAFT_02312 0.11 +0.7 462,832 - H281DRAFT_02312 0.11 +0.2 462,832 - H281DRAFT_02312 0.11 +0.2 462,832 - H281DRAFT_02312 0.11 +0.3 462,832 - H281DRAFT_02312 0.11 -0.1 462,832 - H281DRAFT_02312 0.11 +0.2 462,832 - H281DRAFT_02312 0.11 +0.5 462,832 - H281DRAFT_02312 0.11 +0.5 462,847 + H281DRAFT_02312 0.12 -0.1 462,847 + H281DRAFT_02312 0.12 +0.4 462,847 + H281DRAFT_02312 0.12 -0.1 462,848 - H281DRAFT_02312 0.12 +0.1 462,899 + H281DRAFT_02312 0.14 -0.4 462,900 - H281DRAFT_02312 0.14 +0.1 462,900 - H281DRAFT_02312 0.14 -0.0 462,900 - H281DRAFT_02312 0.14 +0.0 462,934 + H281DRAFT_02312 0.15 -0.0 462,934 + H281DRAFT_02312 0.15 +0.3 462,934 + H281DRAFT_02312 0.15 -0.0 462,935 - H281DRAFT_02312 0.15 -0.1 462,935 - H281DRAFT_02312 0.15 +0.9 462,935 - H281DRAFT_02312 0.15 -0.5 463,055 - H281DRAFT_02312 0.20 -0.0 463,352 + H281DRAFT_02312 0.31 -0.4 463,352 + H281DRAFT_02312 0.31 +0.4 463,352 + H281DRAFT_02312 0.31 +1.2 463,353 - H281DRAFT_02312 0.31 -0.0 463,353 - H281DRAFT_02312 0.31 +0.1 463,353 - -0.6 463,406 - H281DRAFT_02312 0.33 +0.6 463,406 - H281DRAFT_02312 0.33 +0.2 463,406 - H281DRAFT_02312 0.33 +0.0 463,422 + H281DRAFT_02312 0.34 +0.7 463,422 + H281DRAFT_02312 0.34 +0.0 463,422 + H281DRAFT_02312 0.34 +0.2 463,422 + H281DRAFT_02312 0.34 +0.6 463,423 - H281DRAFT_02312 0.34 -0.6 463,423 - H281DRAFT_02312 0.34 -0.0 463,423 - H281DRAFT_02312 0.34 -0.4 463,423 - H281DRAFT_02312 0.34 +0.5 463,423 - H281DRAFT_02312 0.34 +0.9 463,423 - H281DRAFT_02312 0.34 +0.3 463,453 - H281DRAFT_02312 0.35 +0.1 463,453 - H281DRAFT_02312 0.35 +0.3 463,488 + H281DRAFT_02312 0.36 +0.5 463,489 - H281DRAFT_02312 0.36 +0.2 463,489 - H281DRAFT_02312 0.36 +0.4 463,489 - H281DRAFT_02312 0.36 +0.5
Or see this region's nucleotide sequence