Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_01370 and H281DRAFT_01371 are separated by 278 nucleotides H281DRAFT_01371 and H281DRAFT_01372 are separated by 107 nucleotides H281DRAFT_01372 and H281DRAFT_01373 overlap by 4 nucleotides
H281DRAFT_01370: H281DRAFT_01370 - phospholipase C, at 214,203 to 215,672
_01370
H281DRAFT_01371: H281DRAFT_01371 - MFS transporter, AAHS family, 4-hydroxybenzoate transporter, at 215,951 to 217,294
_01371
H281DRAFT_01372: H281DRAFT_01372 - protocatechuate 4,5-dioxygenase alpha subunit (EC 1.13.11.8), at 217,402 to 217,761
_01372
H281DRAFT_01373: H281DRAFT_01373 - protocatechuate 4,5-dioxygenase beta subunit (EC 1.13.11.8), at 217,758 to 218,603
_01373
Position (kb) 215
216
217
218 Strain fitness (log2 ratio) -1
0
1 at 215.105 kb on - strand, within H281DRAFT_01370 at 215.270 kb on - strand, within H281DRAFT_01370 at 215.270 kb on - strand, within H281DRAFT_01370 at 215.270 kb on - strand, within H281DRAFT_01370 at 215.412 kb on + strand, within H281DRAFT_01370 at 215.601 kb on + strand at 215.601 kb on + strand at 215.602 kb on - strand at 216.054 kb on - strand at 216.650 kb on - strand, within H281DRAFT_01371 at 217.470 kb on - strand, within H281DRAFT_01372 at 217.514 kb on - strand, within H281DRAFT_01372 at 217.718 kb on + strand, within H281DRAFT_01372 at 217.915 kb on + strand, within H281DRAFT_01373
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 215,105 - H281DRAFT_01370 0.61 +0.9 215,270 - H281DRAFT_01370 0.73 -0.5 215,270 - H281DRAFT_01370 0.73 -0.3 215,270 - H281DRAFT_01370 0.73 +0.3 215,412 + H281DRAFT_01370 0.82 +1.5 215,601 + -0.0 215,601 + +0.2 215,602 - -0.8 216,054 - -0.7 216,650 - H281DRAFT_01371 0.52 -0.6 217,470 - H281DRAFT_01372 0.19 -0.4 217,514 - H281DRAFT_01372 0.31 +0.0 217,718 + H281DRAFT_01372 0.88 +0.1 217,915 + H281DRAFT_01373 0.19 -0.6
Or see this region's nucleotide sequence