Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_00986

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_00985 and H281DRAFT_00986 are separated by 44 nucleotidesH281DRAFT_00986 and H281DRAFT_00987 are separated by 529 nucleotides H281DRAFT_00985: H281DRAFT_00985 - MFS transporter, putative metabolite:H+ symporter, at 1,105,190 to 1,106,590 _00985 H281DRAFT_00986: H281DRAFT_00986 - 2-Methylisocitrate lyase, PEP mutase family, at 1,106,635 to 1,107,513 _00986 H281DRAFT_00987: H281DRAFT_00987 - glycine betaine/proline transport system ATP-binding protein, at 1,108,043 to 1,109,332 _00987 Position (kb) 1106 1107 1108Strain fitness (log2 ratio) -1 0 1at 1106.024 kb on + strand, within H281DRAFT_00985at 1106.238 kb on + strand, within H281DRAFT_00985at 1106.282 kb on + strand, within H281DRAFT_00985at 1106.283 kb on - strand, within H281DRAFT_00985at 1106.383 kb on + strand, within H281DRAFT_00985at 1106.420 kb on + strand, within H281DRAFT_00985at 1106.634 kb on + strandat 1106.767 kb on + strand, within H281DRAFT_00986at 1106.770 kb on - strand, within H281DRAFT_00986at 1106.831 kb on - strand, within H281DRAFT_00986at 1106.972 kb on + strand, within H281DRAFT_00986at 1106.972 kb on + strand, within H281DRAFT_00986at 1107.706 kb on + strandat 1107.863 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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1,106,024 + H281DRAFT_00985 0.60 +0.2
1,106,238 + H281DRAFT_00985 0.75 -0.2
1,106,282 + H281DRAFT_00985 0.78 +0.3
1,106,283 - H281DRAFT_00985 0.78 +0.0
1,106,383 + H281DRAFT_00985 0.85 -0.6
1,106,420 + H281DRAFT_00985 0.88 +0.4
1,106,634 + +0.7
1,106,767 + H281DRAFT_00986 0.15 +0.1
1,106,770 - H281DRAFT_00986 0.15 +0.0
1,106,831 - H281DRAFT_00986 0.22 +1.1
1,106,972 + H281DRAFT_00986 0.38 +0.6
1,106,972 + H281DRAFT_00986 0.38 +0.1
1,107,706 + -0.3
1,107,863 + -0.8

Or see this region's nucleotide sequence