Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_00906

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_00904 and H281DRAFT_00905 are separated by 1 nucleotidesH281DRAFT_00905 and H281DRAFT_00906 are separated by 152 nucleotidesH281DRAFT_00906 and H281DRAFT_00907 are separated by 432 nucleotides H281DRAFT_00904: H281DRAFT_00904 - (3S)-malyl-CoA thioesterase, at 1,001,406 to 1,002,032 _00904 H281DRAFT_00905: H281DRAFT_00905 - putative ABC transport system ATP-binding protein, at 1,002,034 to 1,002,810 _00905 H281DRAFT_00906: H281DRAFT_00906 - glucose-6-phosphate isomerase, at 1,002,963 to 1,004,585 _00906 H281DRAFT_00907: H281DRAFT_00907 - yjeF C-terminal region, hydroxyethylthiazole kinase-related/yjeF N-terminal region, at 1,005,018 to 1,006,616 _00907 Position (kb) 1002 1003 1004 1005Strain fitness (log2 ratio) -1 0 1at 1002.113 kb on + strand, within H281DRAFT_00905at 1002.113 kb on + strand, within H281DRAFT_00905at 1002.123 kb on + strand, within H281DRAFT_00905at 1002.124 kb on - strand, within H281DRAFT_00905at 1002.128 kb on + strand, within H281DRAFT_00905at 1002.279 kb on + strand, within H281DRAFT_00905at 1002.280 kb on - strand, within H281DRAFT_00905at 1002.560 kb on - strandat 1002.782 kb on + strandat 1002.789 kb on - strandat 1002.832 kb on - strandat 1002.832 kb on - strandat 1002.838 kb on - strandat 1002.838 kb on - strandat 1002.838 kb on - strandat 1002.838 kb on - strandat 1002.903 kb on - strandat 1002.903 kb on - strandat 1003.493 kb on - strandat 1004.585 kb on + strandat 1004.586 kb on - strandat 1004.659 kb on + strandat 1004.886 kb on + strandat 1004.893 kb on + strandat 1004.893 kb on + strandat 1004.893 kb on + strandat 1005.014 kb on + strandat 1005.015 kb on - strandat 1005.037 kb on + strandat 1005.038 kb on - strandat 1005.148 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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1,002,113 + H281DRAFT_00905 0.10 +0.0
1,002,113 + H281DRAFT_00905 0.10 +0.7
1,002,123 + H281DRAFT_00905 0.11 +0.2
1,002,124 - H281DRAFT_00905 0.12 -0.0
1,002,128 + H281DRAFT_00905 0.12 +0.2
1,002,279 + H281DRAFT_00905 0.32 -0.5
1,002,280 - H281DRAFT_00905 0.32 -0.6
1,002,560 - +1.3
1,002,782 + +0.5
1,002,789 - -0.1
1,002,832 - -0.1
1,002,832 - +0.1
1,002,838 - -0.7
1,002,838 - +0.7
1,002,838 - -0.3
1,002,838 - -0.8
1,002,903 - +0.5
1,002,903 - -0.7
1,003,493 - +0.9
1,004,585 + -0.1
1,004,586 - -0.5
1,004,659 + -0.1
1,004,886 + +0.5
1,004,893 + -0.2
1,004,893 + -1.7
1,004,893 + +0.5
1,005,014 + +0.0
1,005,015 - +0.2
1,005,037 + -0.1
1,005,038 - +0.3
1,005,148 + -0.2

Or see this region's nucleotide sequence