Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_00599

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_00597 and H281DRAFT_00598 are separated by 157 nucleotidesH281DRAFT_00598 and H281DRAFT_00599 overlap by 1 nucleotidesH281DRAFT_00599 and H281DRAFT_00600 are separated by 137 nucleotides H281DRAFT_00597: H281DRAFT_00597 - succinyldiaminopimelate desuccinylase, at 666,103 to 667,242 _00597 H281DRAFT_00598: H281DRAFT_00598 - arsenate reductase, at 667,400 to 667,765 _00598 H281DRAFT_00599: H281DRAFT_00599 - 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase, at 667,765 to 668,592 _00599 H281DRAFT_00600: H281DRAFT_00600 - succinyldiaminopimelate aminotransferase apoenzyme, at 668,730 to 669,947 _00600 Position (kb) 667 668 669Strain fitness (log2 ratio) -2 -1 0 1at 667.252 kb on - strandat 667.420 kb on - strandat 667.767 kb on - strandat 668.593 kb on - strandat 668.886 kb on - strand, within H281DRAFT_00600at 668.886 kb on - strand, within H281DRAFT_00600at 668.886 kb on - strand, within H281DRAFT_00600at 668.887 kb on + strand, within H281DRAFT_00600at 668.888 kb on - strand, within H281DRAFT_00600at 668.896 kb on + strand, within H281DRAFT_00600at 668.956 kb on + strand, within H281DRAFT_00600at 668.957 kb on - strand, within H281DRAFT_00600at 669.031 kb on + strand, within H281DRAFT_00600at 669.032 kb on - strand, within H281DRAFT_00600at 669.122 kb on - strand, within H281DRAFT_00600at 669.130 kb on + strand, within H281DRAFT_00600at 669.130 kb on + strand, within H281DRAFT_00600at 669.130 kb on + strand, within H281DRAFT_00600at 669.424 kb on + strand, within H281DRAFT_00600at 669.424 kb on + strand, within H281DRAFT_00600at 669.424 kb on + strand, within H281DRAFT_00600at 669.424 kb on + strand, within H281DRAFT_00600at 669.424 kb on + strand, within H281DRAFT_00600at 669.425 kb on - strand, within H281DRAFT_00600at 669.500 kb on + strand, within H281DRAFT_00600at 669.547 kb on + strand, within H281DRAFT_00600at 669.576 kb on + strand, within H281DRAFT_00600at 669.576 kb on + strand, within H281DRAFT_00600at 669.577 kb on - strand, within H281DRAFT_00600

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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667,252 - -1.8
667,420 - -0.1
667,767 - -0.7
668,593 - -0.0
668,886 - H281DRAFT_00600 0.13 -0.1
668,886 - H281DRAFT_00600 0.13 +0.2
668,886 - H281DRAFT_00600 0.13 -0.1
668,887 + H281DRAFT_00600 0.13 +0.2
668,888 - H281DRAFT_00600 0.13 +0.1
668,896 + H281DRAFT_00600 0.14 +0.4
668,956 + H281DRAFT_00600 0.19 +0.1
668,957 - H281DRAFT_00600 0.19 +1.4
669,031 + H281DRAFT_00600 0.25 +0.3
669,032 - H281DRAFT_00600 0.25 -0.0
669,122 - H281DRAFT_00600 0.32 +0.8
669,130 + H281DRAFT_00600 0.33 -0.2
669,130 + H281DRAFT_00600 0.33 +0.1
669,130 + H281DRAFT_00600 0.33 -0.1
669,424 + H281DRAFT_00600 0.57 -0.1
669,424 + H281DRAFT_00600 0.57 +0.2
669,424 + H281DRAFT_00600 0.57 -0.6
669,424 + H281DRAFT_00600 0.57 +1.6
669,424 + H281DRAFT_00600 0.57 +0.1
669,425 - H281DRAFT_00600 0.57 +0.3
669,500 + H281DRAFT_00600 0.63 +0.6
669,547 + H281DRAFT_00600 0.67 +0.5
669,576 + H281DRAFT_00600 0.69 +0.2
669,576 + H281DRAFT_00600 0.69 +0.3
669,577 - H281DRAFT_00600 0.70 -0.6

Or see this region's nucleotide sequence