Strain Fitness in Pseudomonas fluorescens SBW25-INTG around PFLU_RS31200

Experiment: Sucrose (C) and Ammonium chloride (N); with TAPS; with PEG

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Sucrose (C) and Ammonium chloride (N); with TAPS; with PEG
6,484,626	+		PFLU_RS29160	0.78	-1.1
6,484,626	+		PFLU_RS29160	0.78	+0.3
6,484,627	-		PFLU_RS29160	0.78	-1.1
6,484,627	-		PFLU_RS29160	0.78	+0.9
6,484,627	-		PFLU_RS29160	0.78	-0.3
6,484,627	-		PFLU_RS29160	0.78	-1.5
6,484,674	-		PFLU_RS29160	0.81	+0.4
6,484,674	-		PFLU_RS29160	0.81	-1.5
6,484,793	+		PFLU_RS29160	0.87	-0.6
6,484,793	+		PFLU_RS29160	0.87	-0.3
6,484,793	+		PFLU_RS29160	0.87	-0.2
6,484,794	-		PFLU_RS29160	0.87	+0.5
6,484,794	-		PFLU_RS29160	0.87	+0.2
6,484,794	-		PFLU_RS29160	0.87	-0.0
6,484,836	+		PFLU_RS29160	0.89	+0.3
6,484,836	+		PFLU_RS29160	0.89	-0.2
6,485,014	+				+0.5
6,485,014	+				-1.1
6,485,014	+				+0.0
6,485,014	+				+2.9
6,485,014	+				+0.2
6,485,014	+				-0.5
6,485,014	+				-1.6
6,485,014	+				+0.3
6,485,015	-				-0.3
6,485,015	-				+0.8
6,485,015	-				-0.0
6,485,015	-				+0.6
6,485,015	-				-0.7
6,485,015	-				+0.1
6,485,015	-				+1.9
6,485,020	+				-1.5
6,485,020	+				-1.1
6,485,020	+				+0.5
6,485,020	+				-0.1
6,485,020	+				-0.1
6,485,020	+				-0.4
6,485,021	-				-0.5
6,485,021	-				-0.6
6,485,021	-				+0.1
6,485,021	-				-0.6
6,485,040	+				+0.4
6,485,056	+				+0.7
6,485,057	-				+0.0
6,485,057	-				-1.3
6,485,057	-				+0.9
6,485,057	-				+1.4
6,485,057	-				+0.9
6,485,090	+				-0.6
6,485,090	+				-1.4
6,485,090	+				-1.5
6,485,090	+				-0.8
6,485,090	+				-2.2
6,485,090	+				+0.4
6,485,090	+				+0.9
6,485,090	+				+0.5
6,485,090	+				+0.3
6,485,090	+				-0.8
6,485,090	+				-0.1
6,485,090	+				+0.0
6,485,090	+				-1.6
6,485,091	-				+1.0
6,485,091	-				+0.6
6,485,091	-				+0.6
6,485,091	-				-2.4
6,485,091	-				+0.4
6,485,091	-				+1.4
6,485,091	-				-0.1
6,485,091	-				+0.1
6,485,091	-				+0.5
6,485,091	-				-0.1
6,485,091	-				+1.8
6,485,091	-				-0.1
6,485,091	-				-1.4
6,485,091	-				-0.5
6,485,091	-				-0.6
6,485,091	-				+1.6
6,485,091	-				-0.1
6,485,091	-				+0.7
6,485,091	-				-0.7
6,485,091	-				-0.1
6,485,091	-				+0.0
6,485,091	-				-1.2
6,485,091	-				-0.8
6,485,091	-				-0.6
6,485,094	+				-0.3
6,485,094	+				-0.3
6,485,094	+				+0.1
6,485,094	+				+0.1
6,485,094	+				-0.1
6,485,094	+				+0.4
6,485,094	+				+0.1
6,485,094	+				-0.2
6,485,094	+				-0.7
6,485,094	+				-0.6
6,485,094	+				-0.3
6,485,094	+				-2.7
6,485,094	+				+0.7
6,485,094	+				-1.4
6,485,094	+				-1.5
6,485,094	+				-0.7
6,485,095	-				-0.6
6,485,095	-				+1.9
6,485,095	-				-1.3
6,485,095	-				-0.1
6,485,095	-				+1.0
6,485,095	-				+0.1
6,485,095	-				+0.1
6,485,095	-				-1.8
6,485,095	-				+0.5
6,485,095	-				+0.5
6,485,095	-				-1.7
6,485,095	-				-2.3
6,485,095	-				+0.3
6,485,095	-				-0.8
6,485,095	-				-0.3
6,485,095	-				-1.2
6,485,095	-				-1.6
6,485,127	+				-0.3
6,485,127	+				-0.0
6,485,127	+				-0.3
6,485,127	+				-2.0
6,485,127	+				-0.0
6,485,128	-				+0.1
6,485,128	-				+0.1
6,485,303	-		PFLU_RS29165	0.45	-2.3
6,485,311	+		PFLU_RS29165	0.47	-0.5
6,485,311	+		PFLU_RS29165	0.47	-0.5
6,485,312	-		PFLU_RS29165	0.47	+0.4
6,485,312	-		PFLU_RS29165	0.47	-0.3
6,485,312	-		PFLU_RS29165	0.47	+0.5
6,485,353	+		PFLU_RS29165	0.56	+0.4
6,485,354	-		PFLU_RS29165	0.56	-1.0
6,485,557	-				-0.9
6,485,557	-				-0.2
6,485,776	+		PFLU_RS31200	0.18	-1.1
6,485,776	+		PFLU_RS31200	0.18	-0.3
6,485,815	+		PFLU_RS31200	0.21	-0.1
6,485,893	+		PFLU_RS31200	0.28	-0.9
6,485,893	+		PFLU_RS31200	0.28	-1.3
6,485,893	+		PFLU_RS31200	0.28	-2.1
6,485,972	-		PFLU_RS31200	0.34	+1.9
6,486,050	-		PFLU_RS31200	0.40	-0.7
6,486,050	-		PFLU_RS31200	0.40	-0.2
6,486,050	-		PFLU_RS31200	0.40	-1.0
6,486,050	-		PFLU_RS31200	0.40	-0.1
6,486,166	+		PFLU_RS31200	0.50	-2.7
6,486,166	+		PFLU_RS31200	0.50	+1.3
6,486,166	+		PFLU_RS31200	0.50	-1.4
6,486,206	-		PFLU_RS31200	0.53	+0.3
6,486,307	+		PFLU_RS31200	0.61	-1.2
6,486,308	-		PFLU_RS31200	0.61	-1.2
6,486,319	+		PFLU_RS31200	0.62	-2.9
6,486,319	+		PFLU_RS31200	0.62	-0.5
6,486,320	-		PFLU_RS31200	0.62	-1.1
6,486,382	+		PFLU_RS31200	0.67	+0.0
6,486,383	-		PFLU_RS31200	0.67	-0.3
6,486,584	-		PFLU_RS31200	0.84	-0.5
6,486,740	+				-1.3
6,486,740	+				+1.2
6,486,740	+				-0.8
6,486,740	+				-0.9
6,486,740	+				-2.0
6,486,741	-				-0.1
6,486,741	-				-0.9
6,486,741	-				-1.5
6,486,755	-				+1.1
6,486,755	-				+0.7
6,486,755	-				+0.1
6,486,757	+				-0.7
6,486,757	+				-1.6
6,486,758	-				-1.4
6,486,758	-				-0.2
6,486,758	-				+1.0
6,486,786	+				-0.6
6,486,786	+				-1.2
6,486,786	+				-0.8
6,486,786	+				-1.6
6,486,786	+				-0.9
6,486,815	+				-0.0
6,486,815	+				-0.1
6,486,815	+				+0.7
6,486,815	+				-0.1
6,486,815	+				+0.4
6,486,815	+				-2.5
6,486,815	+				-1.2
6,486,816	-				-1.7
6,486,816	-				+0.1
6,486,816	-				+1.1
6,486,816	-				+0.0
6,486,816	-				-1.7
6,486,818	+				-0.1
6,486,818	+				-2.2
6,486,818	+				-0.8
6,486,818	+				+2.2
6,486,818	+				+0.2
6,486,818	+				-0.7
6,486,818	+				+1.3
6,486,819	-				+0.7
6,486,819	-				+0.5
6,486,819	-				+1.4
6,486,819	-				+0.9
6,486,819	-				+1.0
6,486,832	+				+1.5
6,486,857	+				-0.3
6,486,858	-				-0.1
6,486,882	-				-2.7
6,486,899	+				-0.0
6,486,899	+				+0.4
6,486,899	+				-0.1
6,486,899	+				+0.1
6,486,899	+				+0.8
6,486,899	+				+1.0
6,486,899	+				-0.2
6,486,900	-				-0.4
6,486,900	-				+0.2
6,486,900	-				-0.9
6,486,900	-				+0.4
6,486,901	+				+1.5
6,486,901	+				-0.3
6,486,902	-				+0.3
6,486,925	-				+1.1
6,486,932	+				-0.3
6,486,932	+				-0.3
6,486,932	+				-1.1
6,486,932	+				-0.1
6,486,932	+				-0.6
6,486,932	+				+0.4
6,486,932	+				-0.1
6,486,932	+				-1.1
6,486,932	+				+0.2
6,486,932	+				-0.1
6,486,932	+				+1.4
6,486,932	+				-0.3
6,486,932	+				+0.2
6,486,932	+				-0.9
6,486,932	+				+0.0
6,486,933	-				-0.2
6,486,933	-				+0.4
6,486,933	-				-0.1
6,486,933	-				-0.2
6,486,933	-				+0.2
6,486,933	-				+2.0
6,486,933	-				+0.4
6,486,942	+				-0.0
6,486,942	+				+1.6
6,486,943	-				-0.5
6,486,943	-				+0.1
6,486,943	-				+0.1
6,487,079	+		PFLU_RS29180	0.15	+0.3
6,487,079	+		PFLU_RS29180	0.15	+0.8
6,487,159	-		PFLU_RS29180	0.27	-1.9
6,487,159	-		PFLU_RS29180	0.27	+0.9
6,487,169	+		PFLU_RS29180	0.29	+0.2
6,487,169	+		PFLU_RS29180	0.29	+0.2
6,487,169	+		PFLU_RS29180	0.29	-0.0
6,487,170	-		PFLU_RS29180	0.29	-0.4
6,487,170	-		PFLU_RS29180	0.29	+1.9
6,487,170	-		PFLU_RS29180	0.29	-0.3
6,487,249	+		PFLU_RS29180	0.41	-1.1
6,487,249	+		PFLU_RS29180	0.41	-0.8
6,487,249	+		PFLU_RS29180	0.41	+1.0
6,487,250	-		PFLU_RS29180	0.41	-0.3
6,487,250	-		PFLU_RS29180	0.41	+1.1
6,487,250	-		PFLU_RS29180	0.41	+1.3
6,487,250	-		PFLU_RS29180	0.41	-1.6
6,487,250	-		PFLU_RS29180	0.41	-1.2
6,487,250	-		PFLU_RS29180	0.41	-0.1
6,487,250	-		PFLU_RS29180	0.41	-0.0
6,487,250	-		PFLU_RS29180	0.41	-0.8
6,487,250	-		PFLU_RS29180	0.41	+3.7
6,487,250	-		PFLU_RS29180	0.41	+0.6
6,487,415	+		PFLU_RS29180	0.65	-1.4
6,487,415	+		PFLU_RS29180	0.65	+0.5
6,487,415	+		PFLU_RS29180	0.65	+0.7
6,487,415	+		PFLU_RS29180	0.65	+0.5
6,487,415	+		PFLU_RS29180	0.65	-0.6
6,487,415	+		PFLU_RS29180	0.65	-0.3
6,487,416	-		PFLU_RS29180	0.65	-0.6
6,487,416	-		PFLU_RS29180	0.65	-0.9
6,487,416	-		PFLU_RS29180	0.65	-0.4
6,487,416	-		PFLU_RS29180	0.65	+0.7
6,487,416	-		PFLU_RS29180	0.65	-0.3
6,487,568	+		PFLU_RS29180	0.88	-1.1
6,487,568	+		PFLU_RS29180	0.88	+0.1
6,487,568	+		PFLU_RS29180	0.88	-0.7
6,487,568	+		PFLU_RS29180	0.88	-1.5
6,487,568	+		PFLU_RS29180	0.88	+2.1
6,487,604	+				-0.3
6,487,604	+				-0.7
6,487,604	+				-0.1
6,487,604	+				+1.4
6,487,604	+				-0.3
6,487,604	+				+0.3
6,487,604	+				+0.1
6,487,604	+				+0.6
6,487,605	-				+0.3
6,487,605	-				-0.5
6,487,605	-				-0.9
6,487,605	-				-0.6
6,487,605	-				+0.7
6,487,605	-				-0.2
6,487,605	-				-0.6
6,487,605	-				+0.5
6,487,605	-				+0.9
6,487,605	-				+0.6
6,487,605	-				+0.2
6,487,605	-				+1.0
6,487,658	-				+1.1
6,487,691	+				+0.1
6,487,691	+				-1.8
6,487,692	-				+0.6
6,487,692	-				+1.0
6,487,692	-				+1.1
6,487,692	-				-1.6
6,487,692	-				-1.8
6,487,692	-				+0.4
6,487,717	+				+0.3
6,487,717	+				+1.9
6,487,717	+				+0.4
6,487,717	+				+2.6
6,487,718	-				-0.2
6,487,718	-				+1.2
6,487,718	-				-0.8