Experiment: Varel_Bryant_medium_Glucose with Vancomycin Hydrochloride from Streptomyces orientalis 0.0125 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BT0701 and BT0702 are separated by 265 nucleotides BT0702 and BT0703 are separated by 36 nucleotides BT0703 and BT0704 are separated by 50 nucleotides
BT0701: BT0701 - hypothetical protein (NCBI ptt file), at 873,777 to 875,294
BT0701
BT0702: BT0702 - chloramphenicol acetyltransferase (CAT-III) (NCBI ptt file), at 875,560 to 876,183
BT0702
BT0703: BT0703 - hypothetical protein (NCBI ptt file), at 876,220 to 877,443
BT0703
BT0704: BT0704 - phosphoribosylglycinamide formyltransferase 2 (NCBI ptt file), at 877,494 to 878,660
BT0704
Position (kb) 876
877
878 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 875.292 kb on + strand at 875.359 kb on + strand at 875.360 kb on - strand at 875.505 kb on - strand at 875.556 kb on + strand at 875.556 kb on + strand at 875.730 kb on - strand, within BT0702 at 875.736 kb on + strand, within BT0702 at 875.804 kb on - strand, within BT0702 at 875.872 kb on + strand, within BT0702 at 876.010 kb on - strand, within BT0702 at 876.146 kb on - strand at 876.204 kb on + strand at 876.204 kb on + strand at 876.352 kb on + strand, within BT0703 at 876.357 kb on - strand, within BT0703 at 876.459 kb on + strand, within BT0703 at 876.559 kb on + strand, within BT0703 at 876.673 kb on + strand, within BT0703 at 876.673 kb on + strand, within BT0703 at 876.706 kb on + strand, within BT0703 at 876.725 kb on - strand, within BT0703 at 876.729 kb on - strand, within BT0703 at 876.853 kb on + strand, within BT0703 at 876.927 kb on + strand, within BT0703 at 876.927 kb on + strand, within BT0703 at 876.928 kb on - strand, within BT0703 at 877.112 kb on + strand, within BT0703 at 877.115 kb on - strand, within BT0703 at 877.115 kb on - strand, within BT0703 at 877.239 kb on + strand, within BT0703 at 877.284 kb on + strand, within BT0703 at 877.319 kb on + strand, within BT0703 at 877.434 kb on - strand at 877.454 kb on + strand at 877.454 kb on + strand at 877.460 kb on - strand at 877.607 kb on + strand at 877.608 kb on - strand at 877.709 kb on - strand, within BT0704 at 877.998 kb on + strand, within BT0704
Per-strain Table
Position Strand Gene LocusTag Fraction Varel_Bryant_medium_Glucose with Vancomycin Hydrochloride from Streptomyces orientalis 0.0125 mM remove 875,292 + -1.0 875,359 + -0.0 875,360 - -0.0 875,505 - -3.3 875,556 + -1.0 875,556 + -0.0 875,730 - BT0702 0.27 -0.0 875,736 + BT0702 0.28 -3.6 875,804 - BT0702 0.39 -0.0 875,872 + BT0702 0.50 -1.0 876,010 - BT0702 0.72 +0.2 876,146 - +2.0 876,204 + -0.0 876,204 + -1.0 876,352 + BT0703 0.11 -0.0 876,357 - BT0703 0.11 -2.8 876,459 + BT0703 0.20 -1.6 876,559 + BT0703 0.28 -2.0 876,673 + BT0703 0.37 -0.0 876,673 + BT0703 0.37 +2.0 876,706 + BT0703 0.40 -1.0 876,725 - BT0703 0.41 -2.0 876,729 - BT0703 0.42 -1.6 876,853 + BT0703 0.52 -1.0 876,927 + BT0703 0.58 -1.0 876,927 + BT0703 0.58 -2.0 876,928 - BT0703 0.58 -1.6 877,112 + BT0703 0.73 -2.6 877,115 - BT0703 0.73 -0.6 877,115 - BT0703 0.73 -1.0 877,239 + BT0703 0.83 -0.0 877,284 + BT0703 0.87 -1.0 877,319 + BT0703 0.90 -1.0 877,434 - -0.0 877,454 + -1.0 877,454 + -1.0 877,460 - -1.0 877,607 + -0.0 877,608 - -1.0 877,709 - BT0704 0.18 -4.0 877,998 + BT0704 0.43 -1.0
Or see this region's nucleotide sequence