Experiment: Varel_Bryant_medium_Glucose with Sulfamethizole 0.1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BT4427 and BT4428 are separated by 36 nucleotides BT4428 and BT4429 are separated by 40 nucleotides
BT4427: BT4427 - putative surface layer protein, with cytochrome c domain (NCBI ptt file), at 5,831,498 to 5,833,297
BT4427
BT4428: BT4428 - hypothetical protein (NCBI ptt file), at 5,833,334 to 5,834,224
BT4428
BT4429: BT4429 - putative pteridine-dependent dioxygenase (NCBI ptt file), at 5,834,265 to 5,835,410
BT4429
Position (kb) 5833
5834
5835 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 5832.344 kb on - strand, within BT4427 at 5832.344 kb on - strand, within BT4427 at 5832.358 kb on - strand, within BT4427 at 5832.388 kb on + strand, within BT4427 at 5832.389 kb on - strand, within BT4427 at 5832.389 kb on - strand, within BT4427 at 5832.496 kb on - strand, within BT4427 at 5832.496 kb on - strand, within BT4427 at 5832.496 kb on - strand, within BT4427 at 5832.497 kb on + strand, within BT4427 at 5832.498 kb on - strand, within BT4427 at 5832.498 kb on - strand, within BT4427 at 5832.585 kb on - strand, within BT4427 at 5832.604 kb on + strand, within BT4427 at 5832.734 kb on - strand, within BT4427 at 5832.905 kb on + strand, within BT4427 at 5832.906 kb on - strand, within BT4427 at 5832.936 kb on + strand, within BT4427 at 5832.939 kb on - strand, within BT4427 at 5833.004 kb on - strand, within BT4427 at 5833.077 kb on - strand, within BT4427 at 5833.079 kb on + strand, within BT4427 at 5833.082 kb on - strand, within BT4427 at 5833.172 kb on - strand at 5833.318 kb on - strand at 5833.633 kb on + strand, within BT4428 at 5833.637 kb on - strand, within BT4428 at 5833.637 kb on - strand, within BT4428 at 5834.062 kb on + strand, within BT4428 at 5834.062 kb on + strand, within BT4428 at 5834.100 kb on + strand, within BT4428 at 5834.182 kb on - strand at 5834.182 kb on - strand at 5834.182 kb on - strand at 5834.182 kb on - strand at 5834.186 kb on - strand at 5834.265 kb on - strand at 5834.272 kb on - strand at 5834.406 kb on - strand, within BT4429 at 5834.585 kb on - strand, within BT4429 at 5834.647 kb on + strand, within BT4429 at 5834.835 kb on - strand, within BT4429 at 5834.842 kb on + strand, within BT4429 at 5834.842 kb on + strand, within BT4429 at 5834.842 kb on + strand, within BT4429 at 5834.842 kb on + strand, within BT4429 at 5834.843 kb on - strand, within BT4429 at 5834.843 kb on - strand, within BT4429 at 5834.843 kb on - strand, within BT4429 at 5834.957 kb on - strand, within BT4429 at 5835.108 kb on - strand, within BT4429
Per-strain Table
Position Strand Gene LocusTag Fraction Varel_Bryant_medium_Glucose with Sulfamethizole 0.1 mM remove 5,832,344 - BT4427 0.47 +0.4 5,832,344 - BT4427 0.47 +0.0 5,832,358 - BT4427 0.48 +0.0 5,832,388 + BT4427 0.49 -1.4 5,832,389 - BT4427 0.49 -0.3 5,832,389 - BT4427 0.49 -0.7 5,832,496 - BT4427 0.55 -0.3 5,832,496 - BT4427 0.55 -2.6 5,832,496 - BT4427 0.55 +0.0 5,832,497 + BT4427 0.56 -1.7 5,832,498 - BT4427 0.56 -1.5 5,832,498 - BT4427 0.56 +0.4 5,832,585 - BT4427 0.60 -1.4 5,832,604 + BT4427 0.61 +1.4 5,832,734 - BT4427 0.69 -1.6 5,832,905 + BT4427 0.78 +0.0 5,832,906 - BT4427 0.78 -2.3 5,832,936 + BT4427 0.80 -2.3 5,832,939 - BT4427 0.80 -1.0 5,833,004 - BT4427 0.84 -1.7 5,833,077 - BT4427 0.88 -1.6 5,833,079 + BT4427 0.88 +0.0 5,833,082 - BT4427 0.88 +1.0 5,833,172 - -0.3 5,833,318 - +1.6 5,833,633 + BT4428 0.34 -1.0 5,833,637 - BT4428 0.34 -1.0 5,833,637 - BT4428 0.34 -1.6 5,834,062 + BT4428 0.82 -3.6 5,834,062 + BT4428 0.82 -3.3 5,834,100 + BT4428 0.86 -1.0 5,834,182 - -2.8 5,834,182 - +2.0 5,834,182 - -2.8 5,834,182 - -1.0 5,834,186 - -0.3 5,834,265 - -0.3 5,834,272 - +1.0 5,834,406 - BT4429 0.12 +0.5 5,834,585 - BT4429 0.28 -1.0 5,834,647 + BT4429 0.33 -1.6 5,834,835 - BT4429 0.50 -1.9 5,834,842 + BT4429 0.50 +0.0 5,834,842 + BT4429 0.50 +0.0 5,834,842 + BT4429 0.50 -2.3 5,834,842 + BT4429 0.50 -1.6 5,834,843 - BT4429 0.50 -2.6 5,834,843 - BT4429 0.50 +1.2 5,834,843 - BT4429 0.50 -1.2 5,834,957 - BT4429 0.60 -2.6 5,835,108 - BT4429 0.74 -1.0
Or see this region's nucleotide sequence