Experiment: Varel_Bryant_medium_Glucose with Sulfamethizole 0.1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BT1047 and BT1048 are separated by 24 nucleotides BT1048 and BT1049 are separated by 6 nucleotides
BT1047: BT1047 - hypothetical protein (NCBI ptt file), at 1,327,916 to 1,329,460
BT1047
BT1048: BT1048 - putative secreted endoglycosidase (NCBI ptt file), at 1,329,485 to 1,330,612
BT1048
BT1049: BT1049 - putative patatin-like protein (NCBI ptt file), at 1,330,619 to 1,331,800
BT1049
Position (kb) 1329
1330
1331 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 1328.509 kb on - strand, within BT1047 at 1328.522 kb on + strand, within BT1047 at 1328.523 kb on - strand, within BT1047 at 1328.582 kb on - strand, within BT1047 at 1328.657 kb on - strand, within BT1047 at 1328.757 kb on - strand, within BT1047 at 1328.783 kb on - strand, within BT1047 at 1328.792 kb on + strand, within BT1047 at 1328.831 kb on + strand, within BT1047 at 1328.832 kb on - strand, within BT1047 at 1329.381 kb on - strand at 1329.605 kb on + strand, within BT1048 at 1329.608 kb on + strand, within BT1048 at 1329.804 kb on + strand, within BT1048 at 1329.833 kb on - strand, within BT1048 at 1329.873 kb on + strand, within BT1048 at 1329.873 kb on + strand, within BT1048 at 1329.876 kb on - strand, within BT1048 at 1330.070 kb on - strand, within BT1048 at 1330.162 kb on - strand, within BT1048 at 1330.232 kb on - strand, within BT1048 at 1330.389 kb on + strand, within BT1048 at 1330.400 kb on - strand, within BT1048 at 1330.421 kb on - strand, within BT1048 at 1330.511 kb on + strand at 1330.704 kb on - strand at 1330.705 kb on + strand at 1330.706 kb on - strand at 1330.820 kb on - strand, within BT1049 at 1330.925 kb on + strand, within BT1049 at 1330.945 kb on + strand, within BT1049 at 1330.946 kb on - strand, within BT1049 at 1331.034 kb on - strand, within BT1049 at 1331.041 kb on - strand, within BT1049 at 1331.079 kb on + strand, within BT1049 at 1331.080 kb on - strand, within BT1049 at 1331.116 kb on + strand, within BT1049 at 1331.240 kb on - strand, within BT1049 at 1331.329 kb on + strand, within BT1049 at 1331.353 kb on - strand, within BT1049 at 1331.410 kb on + strand, within BT1049 at 1331.411 kb on - strand, within BT1049 at 1331.455 kb on + strand, within BT1049 at 1331.460 kb on - strand, within BT1049 at 1331.462 kb on - strand, within BT1049 at 1331.462 kb on - strand, within BT1049 at 1331.510 kb on - strand, within BT1049 at 1331.522 kb on - strand, within BT1049 at 1331.543 kb on - strand, within BT1049
Per-strain Table
Position Strand Gene LocusTag Fraction Varel_Bryant_medium_Glucose with Sulfamethizole 0.1 mM remove 1,328,509 - BT1047 0.38 +0.0 1,328,522 + BT1047 0.39 -2.0 1,328,523 - BT1047 0.39 +1.0 1,328,582 - BT1047 0.43 -2.1 1,328,657 - BT1047 0.48 -1.7 1,328,757 - BT1047 0.54 -2.6 1,328,783 - BT1047 0.56 +1.0 1,328,792 + BT1047 0.57 +0.0 1,328,831 + BT1047 0.59 -2.0 1,328,832 - BT1047 0.59 -1.1 1,329,381 - +0.0 1,329,605 + BT1048 0.11 -1.0 1,329,608 + BT1048 0.11 -2.0 1,329,804 + BT1048 0.28 -2.0 1,329,833 - BT1048 0.31 -3.8 1,329,873 + BT1048 0.34 +1.4 1,329,873 + BT1048 0.34 -1.6 1,329,876 - BT1048 0.35 -2.3 1,330,070 - BT1048 0.52 -1.6 1,330,162 - BT1048 0.60 +0.4 1,330,232 - BT1048 0.66 -1.6 1,330,389 + BT1048 0.80 +0.0 1,330,400 - BT1048 0.81 -1.0 1,330,421 - BT1048 0.83 -1.6 1,330,511 + -1.6 1,330,704 - -1.0 1,330,705 + -2.0 1,330,706 - +0.0 1,330,820 - BT1049 0.17 +0.0 1,330,925 + BT1049 0.26 -1.0 1,330,945 + BT1049 0.28 -1.0 1,330,946 - BT1049 0.28 +0.0 1,331,034 - BT1049 0.35 -1.6 1,331,041 - BT1049 0.36 -2.6 1,331,079 + BT1049 0.39 -2.6 1,331,080 - BT1049 0.39 +0.0 1,331,116 + BT1049 0.42 +2.6 1,331,240 - BT1049 0.53 -4.1 1,331,329 + BT1049 0.60 +0.0 1,331,353 - BT1049 0.62 -1.0 1,331,410 + BT1049 0.67 -3.6 1,331,411 - BT1049 0.67 -0.6 1,331,455 + BT1049 0.71 +0.0 1,331,460 - BT1049 0.71 -1.8 1,331,462 - BT1049 0.71 +0.0 1,331,462 - BT1049 0.71 +1.0 1,331,510 - BT1049 0.75 -1.6 1,331,522 - BT1049 0.76 -2.6 1,331,543 - BT1049 0.78 +2.4
Or see this region's nucleotide sequence