Strain Fitness in Bifidobacterium breve UCC2003 around BBR_RS11550

Experiment: diet=StandardDiet; sample=FecalPellet; mouse3; day4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBBR_RS11545 and BBR_RS11550 are separated by 148 nucleotidesBBR_RS11550 and BBR_RS11555 overlap by 4 nucleotides BBR_RS11545: BBR_RS11545 - glutamine amidotransferase, at 349,378 to 350,130 _RS11545 BBR_RS11550: BBR_RS11550 - hypothetical protein, at 350,279 to 350,563 _RS11550 BBR_RS11555: BBR_RS11555 - AarF/ABC1/UbiB kinase family protein, at 350,560 to 352,380 _RS11555 Position (kb) 350 351Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4 5at 349.308 kb on + strandat 349.317 kb on - strandat 349.335 kb on + strandat 349.340 kb on + strandat 349.348 kb on - strandat 349.365 kb on + strandat 349.372 kb on + strandat 350.108 kb on - strandat 350.108 kb on - strandat 350.131 kb on + strandat 350.142 kb on + strandat 350.143 kb on + strandat 350.148 kb on + strandat 350.150 kb on - strandat 350.151 kb on - strandat 350.153 kb on + strandat 350.153 kb on + strandat 350.153 kb on + strandat 350.153 kb on + strandat 350.161 kb on - strandat 350.161 kb on - strandat 350.161 kb on - strandat 350.161 kb on - strandat 350.192 kb on + strandat 350.197 kb on + strandat 350.199 kb on + strandat 350.216 kb on + strandat 350.221 kb on + strandat 350.229 kb on - strandat 350.236 kb on + strandat 350.239 kb on - strandat 350.239 kb on - strandat 350.261 kb on + strandat 350.316 kb on - strand, within BBR_RS11550at 350.329 kb on + strand, within BBR_RS11550at 350.336 kb on - strand, within BBR_RS11550at 350.337 kb on - strand, within BBR_RS11550at 350.342 kb on - strand, within BBR_RS11550at 350.359 kb on - strand, within BBR_RS11550at 350.411 kb on - strand, within BBR_RS11550at 350.411 kb on - strand, within BBR_RS11550at 350.413 kb on + strand, within BBR_RS11550at 350.413 kb on + strand, within BBR_RS11550at 350.413 kb on + strand, within BBR_RS11550at 350.413 kb on + strand, within BBR_RS11550at 350.413 kb on + strand, within BBR_RS11550at 350.420 kb on + strand, within BBR_RS11550at 350.420 kb on + strand, within BBR_RS11550at 350.420 kb on + strand, within BBR_RS11550at 350.420 kb on + strand, within BBR_RS11550at 350.420 kb on + strand, within BBR_RS11550at 350.420 kb on + strand, within BBR_RS11550at 350.420 kb on + strand, within BBR_RS11550at 350.420 kb on + strand, within BBR_RS11550at 350.420 kb on + strand, within BBR_RS11550at 350.421 kb on - strand, within BBR_RS11550at 350.421 kb on - strand, within BBR_RS11550at 350.421 kb on - strand, within BBR_RS11550at 350.421 kb on - strand, within BBR_RS11550at 350.421 kb on - strand, within BBR_RS11550at 350.428 kb on - strand, within BBR_RS11550at 350.457 kb on - strand, within BBR_RS11550at 350.467 kb on + strand, within BBR_RS11550at 350.467 kb on + strand, within BBR_RS11550at 350.475 kb on - strand, within BBR_RS11550at 350.513 kb on + strand, within BBR_RS11550at 350.513 kb on + strand, within BBR_RS11550at 350.513 kb on + strand, within BBR_RS11550at 350.515 kb on - strand, within BBR_RS11550at 350.515 kb on - strand, within BBR_RS11550at 350.521 kb on - strand, within BBR_RS11550at 350.521 kb on - strand, within BBR_RS11550at 350.548 kb on + strandat 350.556 kb on - strandat 350.570 kb on - strandat 350.571 kb on + strandat 350.579 kb on - strandat 350.585 kb on - strandat 350.585 kb on - strandat 350.616 kb on + strandat 350.626 kb on + strandat 350.626 kb on + strandat 350.629 kb on - strandat 350.634 kb on - strandat 350.689 kb on - strandat 350.689 kb on - strandat 350.702 kb on - strandat 350.717 kb on + strandat 350.724 kb on - strandat 350.750 kb on - strand, within BBR_RS11555at 350.754 kb on - strand, within BBR_RS11555at 350.756 kb on - strand, within BBR_RS11555at 350.764 kb on + strand, within BBR_RS11555at 350.810 kb on - strand, within BBR_RS11555at 350.858 kb on + strand, within BBR_RS11555at 350.858 kb on + strand, within BBR_RS11555at 350.866 kb on - strand, within BBR_RS11555at 350.866 kb on - strand, within BBR_RS11555at 350.866 kb on - strand, within BBR_RS11555at 350.910 kb on + strand, within BBR_RS11555at 350.918 kb on - strand, within BBR_RS11555at 350.928 kb on - strand, within BBR_RS11555at 351.011 kb on + strand, within BBR_RS11555at 351.012 kb on - strand, within BBR_RS11555at 351.019 kb on + strand, within BBR_RS11555at 351.019 kb on - strand, within BBR_RS11555at 351.049 kb on + strand, within BBR_RS11555at 351.061 kb on - strand, within BBR_RS11555at 351.088 kb on + strand, within BBR_RS11555at 351.096 kb on - strand, within BBR_RS11555at 351.098 kb on + strand, within BBR_RS11555at 351.137 kb on - strand, within BBR_RS11555at 351.145 kb on + strand, within BBR_RS11555at 351.153 kb on - strand, within BBR_RS11555at 351.153 kb on - strand, within BBR_RS11555at 351.165 kb on + strand, within BBR_RS11555at 351.172 kb on + strand, within BBR_RS11555at 351.173 kb on - strand, within BBR_RS11555at 351.206 kb on - strand, within BBR_RS11555at 351.223 kb on - strand, within BBR_RS11555at 351.238 kb on - strand, within BBR_RS11555at 351.238 kb on - strand, within BBR_RS11555at 351.238 kb on - strand, within BBR_RS11555at 351.238 kb on - strand, within BBR_RS11555at 351.256 kb on - strand, within BBR_RS11555at 351.264 kb on + strand, within BBR_RS11555at 351.264 kb on + strand, within BBR_RS11555at 351.264 kb on + strand, within BBR_RS11555at 351.264 kb on + strand, within BBR_RS11555at 351.270 kb on - strand, within BBR_RS11555at 351.270 kb on - strand, within BBR_RS11555at 351.272 kb on - strand, within BBR_RS11555at 351.272 kb on - strand, within BBR_RS11555at 351.286 kb on + strand, within BBR_RS11555at 351.286 kb on - strand, within BBR_RS11555at 351.288 kb on + strand, within BBR_RS11555at 351.291 kb on - strand, within BBR_RS11555at 351.296 kb on - strand, within BBR_RS11555at 351.304 kb on - strand, within BBR_RS11555at 351.304 kb on - strand, within BBR_RS11555at 351.383 kb on + strand, within BBR_RS11555at 351.390 kb on + strand, within BBR_RS11555at 351.395 kb on + strand, within BBR_RS11555at 351.395 kb on + strand, within BBR_RS11555at 351.395 kb on + strand, within BBR_RS11555at 351.399 kb on - strand, within BBR_RS11555at 351.407 kb on + strand, within BBR_RS11555at 351.407 kb on + strand, within BBR_RS11555at 351.408 kb on - strand, within BBR_RS11555at 351.421 kb on - strand, within BBR_RS11555at 351.424 kb on + strand, within BBR_RS11555at 351.435 kb on + strand, within BBR_RS11555at 351.449 kb on + strand, within BBR_RS11555at 351.452 kb on + strand, within BBR_RS11555at 351.452 kb on + strand, within BBR_RS11555at 351.468 kb on + strand, within BBR_RS11555at 351.479 kb on - strand, within BBR_RS11555at 351.479 kb on - strand, within BBR_RS11555at 351.482 kb on + strand, within BBR_RS11555at 351.488 kb on + strand, within BBR_RS11555at 351.498 kb on + strand, within BBR_RS11555at 351.503 kb on + strand, within BBR_RS11555at 351.527 kb on - strand, within BBR_RS11555at 351.560 kb on - strand, within BBR_RS11555

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Per-strain Table

Position Strand Gene LocusTag Fraction diet=StandardDiet; sample=FecalPellet; mouse3; day4
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349,308 + -1.4
349,317 - +0.4
349,335 + -1.0
349,340 + +0.3
349,348 - +0.4
349,365 + +1.4
349,372 + +0.2
350,108 - -0.3
350,108 - +3.3
350,131 + +0.3
350,142 + +0.5
350,143 + +0.0
350,148 + -1.9
350,150 - +0.1
350,151 - -1.8
350,153 + +3.0
350,153 + -3.5
350,153 + +1.0
350,153 + -1.6
350,161 - +3.1
350,161 - +1.2
350,161 - -0.1
350,161 - +0.4
350,192 + -0.7
350,197 + +0.5
350,199 + -0.4
350,216 + +0.4
350,221 + -2.8
350,229 - -2.4
350,236 + +0.8
350,239 - +1.3
350,239 - +2.1
350,261 + +0.3
350,316 - BBR_RS11550 0.13 +0.2
350,329 + BBR_RS11550 0.18 -0.7
350,336 - BBR_RS11550 0.20 -1.6
350,337 - BBR_RS11550 0.20 -1.5
350,342 - BBR_RS11550 0.22 -2.7
350,359 - BBR_RS11550 0.28 -1.3
350,411 - BBR_RS11550 0.46 +4.0
350,411 - BBR_RS11550 0.46 -0.3
350,413 + BBR_RS11550 0.47 +0.0
350,413 + BBR_RS11550 0.47 -1.3
350,413 + BBR_RS11550 0.47 -1.2
350,413 + BBR_RS11550 0.47 +0.5
350,413 + BBR_RS11550 0.47 +1.3
350,420 + BBR_RS11550 0.49 +3.7
350,420 + BBR_RS11550 0.49 +3.3
350,420 + BBR_RS11550 0.49 +1.5
350,420 + BBR_RS11550 0.49 -1.5
350,420 + BBR_RS11550 0.49 +2.9
350,420 + BBR_RS11550 0.49 +3.5
350,420 + BBR_RS11550 0.49 -1.6
350,420 + BBR_RS11550 0.49 +0.8
350,420 + BBR_RS11550 0.49 -1.9
350,421 - BBR_RS11550 0.50 -0.1
350,421 - BBR_RS11550 0.50 +0.4
350,421 - BBR_RS11550 0.50 -0.6
350,421 - BBR_RS11550 0.50 -0.6
350,421 - BBR_RS11550 0.50 -1.9
350,428 - BBR_RS11550 0.52 +3.3
350,457 - BBR_RS11550 0.62 -2.9
350,467 + BBR_RS11550 0.66 -2.3
350,467 + BBR_RS11550 0.66 -1.0
350,475 - BBR_RS11550 0.69 -0.0
350,513 + BBR_RS11550 0.82 -2.5
350,513 + BBR_RS11550 0.82 +2.0
350,513 + BBR_RS11550 0.82 -0.3
350,515 - BBR_RS11550 0.83 +3.2
350,515 - BBR_RS11550 0.83 +2.3
350,521 - BBR_RS11550 0.85 -1.0
350,521 - BBR_RS11550 0.85 +3.7
350,548 + +2.1
350,556 - -1.3
350,570 - -0.6
350,571 + -0.1
350,579 - -0.7
350,585 - -1.7
350,585 - -1.5
350,616 + +2.3
350,626 + -1.1
350,626 + +2.5
350,629 - +0.4
350,634 - -0.2
350,689 - +1.0
350,689 - +1.1
350,702 - +1.9
350,717 + -1.5
350,724 - +1.3
350,750 - BBR_RS11555 0.10 +2.5
350,754 - BBR_RS11555 0.11 +3.2
350,756 - BBR_RS11555 0.11 +0.9
350,764 + BBR_RS11555 0.11 -2.1
350,810 - BBR_RS11555 0.14 -1.7
350,858 + BBR_RS11555 0.16 -0.1
350,858 + BBR_RS11555 0.16 -2.6
350,866 - BBR_RS11555 0.17 +1.3
350,866 - BBR_RS11555 0.17 -0.3
350,866 - BBR_RS11555 0.17 +5.7
350,910 + BBR_RS11555 0.19 -1.2
350,918 - BBR_RS11555 0.20 -1.7
350,928 - BBR_RS11555 0.20 -1.5
351,011 + BBR_RS11555 0.25 +1.2
351,012 - BBR_RS11555 0.25 -0.8
351,019 + BBR_RS11555 0.25 -2.3
351,019 - BBR_RS11555 0.25 -0.4
351,049 + BBR_RS11555 0.27 -1.1
351,061 - BBR_RS11555 0.28 +0.5
351,088 + BBR_RS11555 0.29 -2.0
351,096 - BBR_RS11555 0.29 +1.0
351,098 + BBR_RS11555 0.30 -1.6
351,137 - BBR_RS11555 0.32 -1.9
351,145 + BBR_RS11555 0.32 +0.8
351,153 - BBR_RS11555 0.33 +1.1
351,153 - BBR_RS11555 0.33 -1.0
351,165 + BBR_RS11555 0.33 +1.2
351,172 + BBR_RS11555 0.34 -0.6
351,173 - BBR_RS11555 0.34 -0.3
351,206 - BBR_RS11555 0.35 -1.8
351,223 - BBR_RS11555 0.36 +0.5
351,238 - BBR_RS11555 0.37 +1.3
351,238 - BBR_RS11555 0.37 +0.2
351,238 - BBR_RS11555 0.37 +1.2
351,238 - BBR_RS11555 0.37 +1.2
351,256 - BBR_RS11555 0.38 -1.3
351,264 + BBR_RS11555 0.39 +0.1
351,264 + BBR_RS11555 0.39 -0.1
351,264 + BBR_RS11555 0.39 -2.2
351,264 + BBR_RS11555 0.39 +0.0
351,270 - BBR_RS11555 0.39 +1.5
351,270 - BBR_RS11555 0.39 -1.4
351,272 - BBR_RS11555 0.39 -1.8
351,272 - BBR_RS11555 0.39 -0.5
351,286 + BBR_RS11555 0.40 +0.7
351,286 - BBR_RS11555 0.40 -1.0
351,288 + BBR_RS11555 0.40 +3.2
351,291 - BBR_RS11555 0.40 +2.7
351,296 - BBR_RS11555 0.40 +1.3
351,304 - BBR_RS11555 0.41 -2.1
351,304 - BBR_RS11555 0.41 +0.2
351,383 + BBR_RS11555 0.45 -0.0
351,390 + BBR_RS11555 0.46 -3.3
351,395 + BBR_RS11555 0.46 +1.7
351,395 + BBR_RS11555 0.46 -1.8
351,395 + BBR_RS11555 0.46 +1.5
351,399 - BBR_RS11555 0.46 +1.0
351,407 + BBR_RS11555 0.47 +0.5
351,407 + BBR_RS11555 0.47 -0.4
351,408 - BBR_RS11555 0.47 +0.3
351,421 - BBR_RS11555 0.47 -2.5
351,424 + BBR_RS11555 0.47 -0.7
351,435 + BBR_RS11555 0.48 +3.3
351,449 + BBR_RS11555 0.49 -1.5
351,452 + BBR_RS11555 0.49 +0.6
351,452 + BBR_RS11555 0.49 -0.4
351,468 + BBR_RS11555 0.50 +0.1
351,479 - BBR_RS11555 0.50 +0.2
351,479 - BBR_RS11555 0.50 -1.2
351,482 + BBR_RS11555 0.51 +0.1
351,488 + BBR_RS11555 0.51 -0.7
351,498 + BBR_RS11555 0.52 -2.8
351,503 + BBR_RS11555 0.52 +0.3
351,527 - BBR_RS11555 0.53 +0.9
351,560 - BBR_RS11555 0.55 +0.9

Or see this region's nucleotide sequence