Strain Fitness in Bacteroides thetaiotaomicron VPI-5482 around BT0725

Experiment: Varel_Bryant_medium_Glucose with Econazole nitrate salt 0.0125 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBT0722 and BT0723 overlap by 4 nucleotidesBT0723 and BT0724 are separated by 13 nucleotidesBT0724 and BT0725 are separated by 303 nucleotidesBT0725 and BT0726 are separated by 192 nucleotidesBT0726 and BT0727 are separated by 225 nucleotides BT0722: BT0722 - conserved hypothetical protein, putative surface protein, function unknown (NCBI ptt file), at 897,605 to 898,225 BT0722 BT0723: BT0723 - hypothetical protein (NCBI ptt file), at 898,222 to 898,500 BT0723 BT0724: BT0724 - hypothetical protein (NCBI ptt file), at 898,514 to 898,726 BT0724 BT0725: BT0725 - dTDP-4-dehydrorhamnose reductase (NCBI ptt file), at 899,030 to 899,938 BT0725 BT0726: BT0726 - conserved hypothetical protein (NCBI ptt file), at 900,131 to 900,259 BT0726 BT0727: BT0727 - conserved hypothetical protein (NCBI ptt file), at 900,485 to 901,666 BT0727 Position (kb) 899 900Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 898.121 kb on + strand, within BT0722at 898.125 kb on - strandat 898.128 kb on + strand, within BT0722at 898.142 kb on - strand, within BT0722at 898.387 kb on + strand, within BT0723at 898.430 kb on - strand, within BT0723at 898.482 kb on + strandat 898.483 kb on - strandat 898.506 kb on - strandat 898.570 kb on - strand, within BT0724at 898.752 kb on + strandat 898.890 kb on - strandat 898.909 kb on + strandat 898.914 kb on + strandat 898.987 kb on + strandat 898.988 kb on - strandat 899.014 kb on + strandat 899.103 kb on - strandat 899.310 kb on - strand, within BT0725at 899.452 kb on - strand, within BT0725at 899.509 kb on - strand, within BT0725at 899.542 kb on - strand, within BT0725at 899.709 kb on - strand, within BT0725at 899.763 kb on - strand, within BT0725at 899.783 kb on - strand, within BT0725at 899.783 kb on - strand, within BT0725at 899.857 kb on + strandat 899.858 kb on - strandat 899.860 kb on - strandat 899.949 kb on - strandat 900.042 kb on - strandat 900.058 kb on + strandat 900.115 kb on - strandat 900.170 kb on + strand, within BT0726at 900.171 kb on - strand, within BT0726at 900.502 kb on - strandat 900.502 kb on - strandat 900.542 kb on - strandat 900.560 kb on - strandat 900.613 kb on - strand, within BT0727at 900.613 kb on - strand, within BT0727at 900.619 kb on + strand, within BT0727at 900.620 kb on - strand, within BT0727at 900.690 kb on - strand, within BT0727at 900.712 kb on - strand, within BT0727at 900.736 kb on - strand, within BT0727at 900.793 kb on + strand, within BT0727at 900.871 kb on - strand, within BT0727at 900.871 kb on - strand, within BT0727at 900.934 kb on - strand, within BT0727

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Per-strain Table

Position Strand Gene LocusTag Fraction Varel_Bryant_medium_Glucose with Econazole nitrate salt 0.0125 mM
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898,121 + BT0722 0.83 -2.6
898,125 - -1.0
898,128 + BT0722 0.84 -0.6
898,142 - BT0722 0.86 -2.0
898,387 + BT0723 0.59 -0.9
898,430 - BT0723 0.75 -1.3
898,482 + +0.6
898,483 - -1.0
898,506 - -3.0
898,570 - BT0724 0.26 -1.6
898,752 + -2.0
898,890 - +0.6
898,909 + +0.3
898,914 + -1.5
898,987 + -0.6
898,988 - -1.0
899,014 + -3.3
899,103 - -1.0
899,310 - BT0725 0.31 -1.7
899,452 - BT0725 0.46 -3.0
899,509 - BT0725 0.53 -0.0
899,542 - BT0725 0.56 -2.0
899,709 - BT0725 0.75 -1.6
899,763 - BT0725 0.81 +1.3
899,783 - BT0725 0.83 -2.0
899,783 - BT0725 0.83 -1.0
899,857 + -0.6
899,858 - -1.0
899,860 - -0.6
899,949 - -2.8
900,042 - -0.6
900,058 + -0.6
900,115 - +0.3
900,170 + BT0726 0.30 +2.0
900,171 - BT0726 0.31 -0.0
900,502 - -1.6
900,502 - -0.7
900,542 - +0.6
900,560 - -1.6
900,613 - BT0727 0.11 -0.0
900,613 - BT0727 0.11 -0.6
900,619 + BT0727 0.11 -0.0
900,620 - BT0727 0.11 -0.0
900,690 - BT0727 0.17 -0.7
900,712 - BT0727 0.19 +2.6
900,736 - BT0727 0.21 -0.0
900,793 + BT0727 0.26 +1.0
900,871 - BT0727 0.33 -2.3
900,871 - BT0727 0.33 -2.3
900,934 - BT0727 0.38 -1.6

Or see this region's nucleotide sequence