Experiment: Varel_Bryant_medium_Glucose with Econazole nitrate salt 0.0125 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BT0722 and BT0723 overlap by 4 nucleotides BT0723 and BT0724 are separated by 13 nucleotides BT0724 and BT0725 are separated by 303 nucleotides BT0725 and BT0726 are separated by 192 nucleotides BT0726 and BT0727 are separated by 225 nucleotides
BT0722: BT0722 - conserved hypothetical protein, putative surface protein, function unknown (NCBI ptt file), at 897,605 to 898,225
BT0722
BT0723: BT0723 - hypothetical protein (NCBI ptt file), at 898,222 to 898,500
BT0723
BT0724: BT0724 - hypothetical protein (NCBI ptt file), at 898,514 to 898,726
BT0724
BT0725: BT0725 - dTDP-4-dehydrorhamnose reductase (NCBI ptt file), at 899,030 to 899,938
BT0725
BT0726: BT0726 - conserved hypothetical protein (NCBI ptt file), at 900,131 to 900,259
BT0726
BT0727: BT0727 - conserved hypothetical protein (NCBI ptt file), at 900,485 to 901,666
BT0727
Position (kb)
899
900 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 898.121 kb on + strand, within BT0722 at 898.125 kb on - strand at 898.128 kb on + strand, within BT0722 at 898.142 kb on - strand, within BT0722 at 898.387 kb on + strand, within BT0723 at 898.430 kb on - strand, within BT0723 at 898.482 kb on + strand at 898.483 kb on - strand at 898.506 kb on - strand at 898.570 kb on - strand, within BT0724 at 898.752 kb on + strand at 898.890 kb on - strand at 898.909 kb on + strand at 898.914 kb on + strand at 898.987 kb on + strand at 898.988 kb on - strand at 899.014 kb on + strand at 899.103 kb on - strand at 899.310 kb on - strand, within BT0725 at 899.452 kb on - strand, within BT0725 at 899.509 kb on - strand, within BT0725 at 899.542 kb on - strand, within BT0725 at 899.709 kb on - strand, within BT0725 at 899.763 kb on - strand, within BT0725 at 899.783 kb on - strand, within BT0725 at 899.783 kb on - strand, within BT0725 at 899.857 kb on + strand at 899.858 kb on - strand at 899.860 kb on - strand at 899.949 kb on - strand at 900.042 kb on - strand at 900.058 kb on + strand at 900.115 kb on - strand at 900.170 kb on + strand, within BT0726 at 900.171 kb on - strand, within BT0726 at 900.502 kb on - strand at 900.502 kb on - strand at 900.542 kb on - strand at 900.560 kb on - strand at 900.613 kb on - strand, within BT0727 at 900.613 kb on - strand, within BT0727 at 900.619 kb on + strand, within BT0727 at 900.620 kb on - strand, within BT0727 at 900.690 kb on - strand, within BT0727 at 900.712 kb on - strand, within BT0727 at 900.736 kb on - strand, within BT0727 at 900.793 kb on + strand, within BT0727 at 900.871 kb on - strand, within BT0727 at 900.871 kb on - strand, within BT0727 at 900.934 kb on - strand, within BT0727
Per-strain Table
Position Strand Gene LocusTag Fraction Varel_Bryant_medium_Glucose with Econazole nitrate salt 0.0125 mM remove 898,121 + BT0722 0.83 -2.6 898,125 - -1.0 898,128 + BT0722 0.84 -0.6 898,142 - BT0722 0.86 -2.0 898,387 + BT0723 0.59 -0.9 898,430 - BT0723 0.75 -1.3 898,482 + +0.6 898,483 - -1.0 898,506 - -3.0 898,570 - BT0724 0.26 -1.6 898,752 + -2.0 898,890 - +0.6 898,909 + +0.3 898,914 + -1.5 898,987 + -0.6 898,988 - -1.0 899,014 + -3.3 899,103 - -1.0 899,310 - BT0725 0.31 -1.7 899,452 - BT0725 0.46 -3.0 899,509 - BT0725 0.53 -0.0 899,542 - BT0725 0.56 -2.0 899,709 - BT0725 0.75 -1.6 899,763 - BT0725 0.81 +1.3 899,783 - BT0725 0.83 -2.0 899,783 - BT0725 0.83 -1.0 899,857 + -0.6 899,858 - -1.0 899,860 - -0.6 899,949 - -2.8 900,042 - -0.6 900,058 + -0.6 900,115 - +0.3 900,170 + BT0726 0.30 +2.0 900,171 - BT0726 0.31 -0.0 900,502 - -1.6 900,502 - -0.7 900,542 - +0.6 900,560 - -1.6 900,613 - BT0727 0.11 -0.0 900,613 - BT0727 0.11 -0.6 900,619 + BT0727 0.11 -0.0 900,620 - BT0727 0.11 -0.0 900,690 - BT0727 0.17 -0.7 900,712 - BT0727 0.19 +2.6 900,736 - BT0727 0.21 -0.0 900,793 + BT0727 0.26 +1.0 900,871 - BT0727 0.33 -2.3 900,871 - BT0727 0.33 -2.3 900,934 - BT0727 0.38 -1.6
Or see this region's nucleotide sequence