Strain Fitness in Bifidobacterium breve UCC2003 around BBR_RS21165

Experiment: diet=StandardDiet; sample=FecalPellet; mouse1; day4

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	diet=StandardDiet; sample=FecalPellet; mouse1; day4
2,339,552	+		BBR_RS20190	0.23	-2.6
2,339,552	+		BBR_RS20190	0.23	-1.7
2,339,553	+		BBR_RS20190	0.23	-2.9
2,339,554	+		BBR_RS20190	0.23	-1.4
2,339,558	+		BBR_RS20190	0.24	-3.0
2,339,558	+		BBR_RS20190	0.24	-2.0
2,339,561	-		BBR_RS20190	0.24	-2.6
2,339,597	+		BBR_RS20190	0.27	-3.6
2,339,597	+		BBR_RS20190	0.27	-2.2
2,339,599	-		BBR_RS20190	0.27	-2.3
2,339,607	+		BBR_RS20190	0.28	-1.8
2,339,624	-		BBR_RS20190	0.29	-2.4
2,339,648	+		BBR_RS20190	0.31	-2.9
2,339,660	+		BBR_RS20190	0.32	-4.0
2,339,669	+		BBR_RS20190	0.32	-4.6
2,339,669	+		BBR_RS20190	0.32	-1.6
2,339,679	+		BBR_RS20190	0.33	-2.2
2,339,682	-		BBR_RS20190	0.33	-3.0
2,339,682	-		BBR_RS20190	0.33	-4.1
2,339,686	+		BBR_RS20190	0.34	-0.7
2,339,686	+		BBR_RS20190	0.34	-1.4
2,339,686	+		BBR_RS20190	0.34	-1.8
2,339,703	+		BBR_RS20190	0.35	-3.6
2,339,722	-		BBR_RS20190	0.37	-1.7
2,339,722	-		BBR_RS20190	0.37	-3.0
2,339,749	-		BBR_RS20190	0.39	-2.4
2,339,760	-		BBR_RS20190	0.39	-3.8
2,339,760	-		BBR_RS20190	0.39	-1.8
2,339,779	+		BBR_RS20190	0.41	-2.5
2,339,779	+		BBR_RS20190	0.41	-0.1
2,339,787	+		BBR_RS20190	0.42	-3.2
2,339,805	-		BBR_RS20190	0.43	-1.6
2,339,805	-		BBR_RS20190	0.43	-2.2
2,339,818	-		BBR_RS20190	0.44	-3.0
2,339,841	-		BBR_RS20190	0.46	-2.0
2,339,843	+		BBR_RS20190	0.46	-2.3
2,339,850	+		BBR_RS20190	0.46	-1.2
2,339,855	+		BBR_RS20190	0.47	-4.2
2,339,855	+		BBR_RS20190	0.47	-4.0
2,339,857	-		BBR_RS20190	0.47	-2.6
2,339,863	-		BBR_RS20190	0.47	-3.2
2,339,863	-		BBR_RS20190	0.47	-2.5
2,339,863	-		BBR_RS20190	0.47	-3.0
2,339,863	-		BBR_RS20190	0.47	-2.6
2,339,863	-		BBR_RS20190	0.47	-1.8
2,339,884	+		BBR_RS20190	0.49	-2.1
2,339,885	-		BBR_RS20190	0.49	-4.2
2,339,887	-		BBR_RS20190	0.49	-0.8
2,339,901	+		BBR_RS20190	0.50	-2.5
2,339,901	+		BBR_RS20190	0.50	-2.6
2,339,901	+		BBR_RS20190	0.50	-3.3
2,339,901	+		BBR_RS20190	0.50	-2.7
2,339,902	+		BBR_RS20190	0.50	-3.0
2,339,902	+		BBR_RS20190	0.50	-1.4
2,339,902	+		BBR_RS20190	0.50	-2.5
2,339,909	-		BBR_RS20190	0.51	-3.0
2,339,909	-		BBR_RS20190	0.51	-2.8
2,339,910	-		BBR_RS20190	0.51	-1.7
2,339,911	+		BBR_RS20190	0.51	-2.7
2,339,925	+		BBR_RS20190	0.52	-3.7
2,339,927	+		BBR_RS20190	0.52	+0.7
2,339,933	-		BBR_RS20190	0.53	-2.0
2,339,935	-		BBR_RS20190	0.53	-3.8
2,339,956	+		BBR_RS20190	0.55	-3.2
2,339,958	+		BBR_RS20190	0.55	-1.5
2,339,958	+		BBR_RS20190	0.55	-2.3
2,339,958	+		BBR_RS20190	0.55	-1.4
2,339,958	+		BBR_RS20190	0.55	-1.3
2,339,958	+		BBR_RS20190	0.55	-1.9
2,339,958	+		BBR_RS20190	0.55	-2.8
2,339,966	-		BBR_RS20190	0.55	-1.2
2,339,966	-		BBR_RS20190	0.55	-3.9
2,339,966	-		BBR_RS20190	0.55	-3.8
2,339,971	-		BBR_RS20190	0.56	-1.7
2,339,974	-		BBR_RS20190	0.56	-3.4
2,339,974	-		BBR_RS20190	0.56	-2.7
2,339,999	+		BBR_RS20190	0.58	-2.5
2,340,001	-		BBR_RS20190	0.58	-2.3
2,340,020	+		BBR_RS20190	0.60	-4.0
2,340,021	+		BBR_RS20190	0.60	-2.2
2,340,021	+		BBR_RS20190	0.60	-2.4
2,340,029	+		BBR_RS20190	0.60	-2.7
2,340,046	+		BBR_RS20190	0.62	-1.3
2,340,046	+		BBR_RS20190	0.62	-2.0
2,340,046	+		BBR_RS20190	0.62	-2.7
2,340,055	-		BBR_RS20190	0.62	-1.0
2,340,057	+		BBR_RS20190	0.62	-3.4
2,340,057	+		BBR_RS20190	0.62	-2.4
2,340,060	-		BBR_RS20190	0.63	-4.3
2,340,079	+		BBR_RS20190	0.64	-2.2
2,340,079	+		BBR_RS20190	0.64	-1.4
2,340,079	+		BBR_RS20190	0.64	-0.6
2,340,087	-		BBR_RS20190	0.65	-2.2
2,340,088	+		BBR_RS20190	0.65	-3.1
2,340,092	-		BBR_RS20190	0.65	-2.2
2,340,099	+		BBR_RS20190	0.66	+0.0
2,340,128	-		BBR_RS20190	0.68	-3.1
2,340,128	-		BBR_RS20190	0.68	-3.7
2,340,135	-		BBR_RS20190	0.69	-2.8
2,340,135	-		BBR_RS20190	0.69	-3.0
2,340,136	+		BBR_RS20190	0.69	-4.1
2,340,141	+		BBR_RS20190	0.69	-1.9
2,340,152	+		BBR_RS20190	0.70	-1.8
2,340,153	+		BBR_RS20190	0.70	-2.3
2,340,153	+		BBR_RS20190	0.70	-1.1
2,340,159	+		BBR_RS20190	0.70	-1.6
2,340,160	-		BBR_RS20190	0.70	-3.2
2,340,161	-		BBR_RS20190	0.71	-4.1
2,340,161	-		BBR_RS20190	0.71	-2.5
2,340,161	-		BBR_RS20190	0.71	-3.0
2,340,161	-		BBR_RS20190	0.71	-1.0
2,340,161	-		BBR_RS20190	0.71	-3.3
2,340,161	-		BBR_RS20190	0.71	-2.4
2,340,161	-		BBR_RS20190	0.71	-2.9
2,340,171	-		BBR_RS20190	0.71	-2.2
2,340,186	+		BBR_RS20190	0.72	-1.9
2,340,241	+		BBR_RS20190	0.77	+0.5
2,340,262	+		BBR_RS20190	0.78	-0.8
2,340,262	+		BBR_RS20190	0.78	-3.3
2,340,270	-		BBR_RS20190	0.79	-2.2
2,340,270	-		BBR_RS20190	0.79	-1.9
2,340,270	-		BBR_RS20190	0.79	-0.7
2,340,270	-		BBR_RS20190	0.79	-1.2
2,340,280	+		BBR_RS20190	0.80	-3.7
2,340,285	-		BBR_RS20190	0.80	-2.7
2,340,288	-		BBR_RS20190	0.80	-2.6
2,340,288	-		BBR_RS20190	0.80	-3.7
2,340,298	-		BBR_RS20190	0.81	-2.3
2,340,298	-		BBR_RS20190	0.81	-3.3
2,340,298	-		BBR_RS20190	0.81	-4.6
2,340,298	-		BBR_RS20190	0.81	-3.3
2,340,307	+		BBR_RS20190	0.82	-2.7
2,340,307	+		BBR_RS20190	0.82	-2.1
2,340,314	+		BBR_RS20190	0.82	-1.2
2,340,314	+		BBR_RS20190	0.82	-3.5
2,340,314	+		BBR_RS20190	0.82	-3.0
2,340,319	+		BBR_RS20190	0.83	-1.9
2,340,322	-		BBR_RS20190	0.83	-3.5
2,340,329	-		BBR_RS20190	0.84	-1.3
2,340,332	-		BBR_RS20190	0.84	-2.2
2,340,362	+		BBR_RS20190	0.86	-2.4
2,340,380	-		BBR_RS20190	0.88	-1.6
2,340,380	-		BBR_RS20190	0.88	-2.2
2,340,380	-		BBR_RS20190	0.88	-3.0
2,340,380	-		BBR_RS20190	0.88	-0.9
2,340,386	+		BBR_RS20190	0.88	-1.7
2,340,394	-		BBR_RS20190	0.89	-1.6
2,340,394	-		BBR_RS20190	0.89	-1.9
2,340,425	-				-3.9
2,340,449	-				-2.3
2,340,462	-				-3.3
2,340,480	-				-2.5
2,340,480	-				-1.1
2,340,482	-				-0.4
2,340,485	-				-3.6
2,340,494	+				-2.7
2,340,494	+				-2.5
2,340,494	+				-2.4
2,340,500	-				-1.5
2,340,507	+				-0.3
2,340,529	-				-2.1
2,340,537	+				-3.5
2,340,545	-		BBR_RS21165	0.12	-3.1
2,340,549	-		BBR_RS21165	0.14	-2.6
2,340,643	+		BBR_RS21165	0.61	-4.1
2,340,704	+				-2.4
2,340,704	+				-1.3
2,340,711	-				+0.4
2,340,714	+				-2.1
2,340,719	-				-2.4
2,340,810	+				-2.7
2,340,821	-				-2.7
2,340,831	+				-1.9
2,340,831	+				-3.6
2,340,835	+		BBR_RS20195	0.10	-1.0
2,340,843	-		BBR_RS20195	0.11	-2.2
2,340,862	-		BBR_RS20195	0.12	-4.1
2,340,886	+		BBR_RS20195	0.14	-1.8
2,340,907	+		BBR_RS20195	0.16	-3.2
2,340,907	+		BBR_RS20195	0.16	-3.1
2,340,915	-		BBR_RS20195	0.17	-0.5
2,340,942	+		BBR_RS20195	0.19	-2.6
2,340,944	+		BBR_RS20195	0.19	-3.4
2,340,944	+		BBR_RS20195	0.19	-1.3
2,340,952	-		BBR_RS20195	0.20	-3.6
2,340,952	-		BBR_RS20195	0.20	-2.7
2,340,952	-		BBR_RS20195	0.20	-3.9
2,340,977	-		BBR_RS20195	0.22	-1.4
2,340,989	-		BBR_RS20195	0.23	-3.8
2,340,996	+		BBR_RS20195	0.23	-2.3
2,340,996	-		BBR_RS20195	0.23	-2.5
2,340,997	-		BBR_RS20195	0.23	-4.3
2,341,011	+		BBR_RS20195	0.25	-1.3
2,341,017	-		BBR_RS20195	0.25	-4.6
2,341,019	-		BBR_RS20195	0.25	-2.9
2,341,019	-		BBR_RS20195	0.25	-4.3
2,341,019	-		BBR_RS20195	0.25	-3.0
2,341,019	-		BBR_RS20195	0.25	-2.6
2,341,028	+		BBR_RS20195	0.26	-3.6
2,341,029	-		BBR_RS20195	0.26	-2.7
2,341,029	-		BBR_RS20195	0.26	-2.3
2,341,036	-		BBR_RS20195	0.27	-4.3
2,341,041	-		BBR_RS20195	0.27	-4.1
2,341,046	-		BBR_RS20195	0.28	-2.8
2,341,060	-		BBR_RS20195	0.29	-2.0
2,341,064	-		BBR_RS20195	0.29	-3.4
2,341,065	+		BBR_RS20195	0.29	-1.9
2,341,102	+		BBR_RS20195	0.32	-2.5
2,341,107	+		BBR_RS20195	0.33	-1.4
2,341,107	+		BBR_RS20195	0.33	-2.9
2,341,110	-		BBR_RS20195	0.33	-3.9
2,341,124	+		BBR_RS20195	0.34	-4.7
2,341,124	+		BBR_RS20195	0.34	-2.1
2,341,172	-		BBR_RS20195	0.38	-3.9
2,341,182	+		BBR_RS20195	0.39	-1.5
2,341,182	+		BBR_RS20195	0.39	-1.7
2,341,183	-		BBR_RS20195	0.39	-1.4
2,341,192	+		BBR_RS20195	0.40	-3.2
2,341,205	+		BBR_RS20195	0.41	-3.2
2,341,205	+		BBR_RS20195	0.41	-3.2
2,341,205	+		BBR_RS20195	0.41	-1.8
2,341,205	+		BBR_RS20195	0.41	-2.5
2,341,212	+		BBR_RS20195	0.41	-3.1
2,341,213	-		BBR_RS20195	0.41	-1.7
2,341,219	+		BBR_RS20195	0.42	+0.5
2,341,219	+		BBR_RS20195	0.42	-3.1
2,341,220	+		BBR_RS20195	0.42	-3.8
2,341,226	+		BBR_RS20195	0.42	-0.1
2,341,234	-		BBR_RS20195	0.43	-2.9
2,341,254	+		BBR_RS20195	0.45	-2.5
2,341,265	+		BBR_RS20195	0.46	-3.5
2,341,265	+		BBR_RS20195	0.46	-3.5
2,341,265	+		BBR_RS20195	0.46	-3.5
2,341,273	-		BBR_RS20195	0.46	-2.3
2,341,273	-		BBR_RS20195	0.46	-3.4
2,341,273	-		BBR_RS20195	0.46	-1.6
2,341,273	-		BBR_RS20195	0.46	-2.7
2,341,296	+		BBR_RS20195	0.48	-1.5
2,341,303	+		BBR_RS20195	0.49	-3.0
2,341,304	-		BBR_RS20195	0.49	-4.0
2,341,304	-		BBR_RS20195	0.49	-2.0
2,341,309	-		BBR_RS20195	0.49	-2.0
2,341,324	+		BBR_RS20195	0.51	-2.5
2,341,324	+		BBR_RS20195	0.51	-4.2
2,341,334	+		BBR_RS20195	0.51	-1.4
2,341,334	+		BBR_RS20195	0.51	-1.5
2,341,342	-		BBR_RS20195	0.52	-0.2
2,341,369	+		BBR_RS20195	0.54	-2.4
2,341,388	-		BBR_RS20195	0.56	-3.1
2,341,388	-		BBR_RS20195	0.56	-3.3
2,341,388	-		BBR_RS20195	0.56	-3.0
2,341,388	-		BBR_RS20195	0.56	-0.9
2,341,404	-		BBR_RS20195	0.57	-2.6
2,341,409	+		BBR_RS20195	0.58	-1.8
2,341,417	-		BBR_RS20195	0.58	-0.9
2,341,417	-		BBR_RS20195	0.58	-2.2
2,341,427	+		BBR_RS20195	0.59	-4.3
2,341,427	+		BBR_RS20195	0.59	-2.3
2,341,427	+		BBR_RS20195	0.59	-3.7
2,341,427	+		BBR_RS20195	0.59	-2.4
2,341,430	-		BBR_RS20195	0.59	-3.8
2,341,430	-		BBR_RS20195	0.59	-0.4
2,341,430	-		BBR_RS20195	0.59	-1.3
2,341,435	-		BBR_RS20195	0.60	-1.6
2,341,435	-		BBR_RS20195	0.60	+1.1
2,341,435	-		BBR_RS20195	0.60	-1.9
2,341,437	+		BBR_RS20195	0.60	-2.4
2,341,445	-		BBR_RS20195	0.61	-3.1
2,341,465	-		BBR_RS20195	0.62	-2.7
2,341,474	+		BBR_RS20195	0.63	-3.2
2,341,474	+		BBR_RS20195	0.63	-3.7
2,341,492	+		BBR_RS20195	0.64	-2.3
2,341,502	+		BBR_RS20195	0.65	-2.6
2,341,502	+		BBR_RS20195	0.65	-1.8
2,341,502	+		BBR_RS20195	0.65	-4.3
2,341,505	-		BBR_RS20195	0.66	-0.5
2,341,512	+		BBR_RS20195	0.66	-4.7
2,341,519	+		BBR_RS20195	0.67	-2.4
2,341,521	-		BBR_RS20195	0.67	-3.9
2,341,538	-		BBR_RS20195	0.68	-0.5
2,341,538	-		BBR_RS20195	0.68	+0.2
2,341,540	+		BBR_RS20195	0.68	-3.0
2,341,541	+		BBR_RS20195	0.68	-4.1
2,341,549	-		BBR_RS20195	0.69	-2.5
2,341,554	+		BBR_RS20195	0.70	-3.3
2,341,596	-		BBR_RS20195	0.73	-2.6
2,341,598	+		BBR_RS20195	0.73	-2.2
2,341,598	+		BBR_RS20195	0.73	-1.4
2,341,605	+		BBR_RS20195	0.74	-2.6
2,341,636	+		BBR_RS20195	0.76	+0.3
2,341,636	+		BBR_RS20195	0.76	-3.5
2,341,640	+		BBR_RS20195	0.77	-2.8
2,341,662	-		BBR_RS20195	0.78	-3.0
2,341,663	+		BBR_RS20195	0.79	-2.4
2,341,663	+		BBR_RS20195	0.79	-3.1
2,341,663	+		BBR_RS20195	0.79	-3.2
2,341,663	+		BBR_RS20195	0.79	-4.3
2,341,663	-		BBR_RS20195	0.79	-3.7
2,341,668	+		BBR_RS20195	0.79	-3.0
2,341,670	-		BBR_RS20195	0.79	-0.7
2,341,670	-		BBR_RS20195	0.79	-3.8
2,341,670	-		BBR_RS20195	0.79	-3.3
2,341,671	-		BBR_RS20195	0.79	-3.7
2,341,676	-		BBR_RS20195	0.80	-0.8
2,341,678	+		BBR_RS20195	0.80	-1.6
2,341,678	-		BBR_RS20195	0.80	-1.2
2,341,711	-		BBR_RS20195	0.83	-1.0
2,341,713	-		BBR_RS20195	0.83	-3.3