Strain Fitness in Bifidobacterium breve UCC2003 around BBR_RS19450

Experiment: diet=StandardDiet; sample=FecalPellet; mouse1; day4

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	diet=StandardDiet; sample=FecalPellet; mouse1; day4
2,145,271	+		BBR_RS19445	0.21	+0.6
2,145,271	+		BBR_RS19445	0.21	+0.8
2,145,277	+		BBR_RS19445	0.22	-0.5
2,145,288	+		BBR_RS19445	0.23	+0.3
2,145,292	+		BBR_RS19445	0.23	+0.1
2,145,297	+		BBR_RS19445	0.24	-0.6
2,145,305	-		BBR_RS19445	0.24	-2.7
2,145,320	-		BBR_RS19445	0.26	+1.1
2,145,332	-		BBR_RS19445	0.27	+1.8
2,145,334	-		BBR_RS19445	0.27	+0.3
2,145,347	+		BBR_RS19445	0.28	+1.1
2,145,355	+		BBR_RS19445	0.29	-0.4
2,145,355	-		BBR_RS19445	0.29	-0.0
2,145,356	+		BBR_RS19445	0.29	+2.0
2,145,356	+		BBR_RS19445	0.29	+0.2
2,145,364	-		BBR_RS19445	0.30	-0.2
2,145,364	-		BBR_RS19445	0.30	+0.1
2,145,366	+		BBR_RS19445	0.30	-1.9
2,145,366	+		BBR_RS19445	0.30	-1.5
2,145,375	-		BBR_RS19445	0.31	-1.6
2,145,381	-		BBR_RS19445	0.31	-0.1
2,145,396	+		BBR_RS19445	0.32	-0.0
2,145,417	+		BBR_RS19445	0.34	-0.4
2,145,432	-		BBR_RS19445	0.36	-1.7
2,145,465	-		BBR_RS19445	0.39	-0.0
2,145,467	+		BBR_RS19445	0.39	+0.6
2,145,475	-		BBR_RS19445	0.39	-2.0
2,145,475	-		BBR_RS19445	0.39	-3.0
2,145,520	+		BBR_RS19445	0.43	+0.8
2,145,530	-		BBR_RS19445	0.44	+3.1
2,145,530	-		BBR_RS19445	0.44	-0.9
2,145,531	+		BBR_RS19445	0.44	+1.1
2,145,540	-		BBR_RS19445	0.45	-0.4
2,145,540	-		BBR_RS19445	0.45	+0.4
2,145,548	+		BBR_RS19445	0.46	-1.0
2,145,553	+		BBR_RS19445	0.46	+1.2
2,145,556	+		BBR_RS19445	0.47	+0.9
2,145,558	+		BBR_RS19445	0.47	+2.3
2,145,571	+		BBR_RS19445	0.48	+0.4
2,145,588	-		BBR_RS19445	0.49	-0.8
2,145,588	-		BBR_RS19445	0.49	+0.5
2,145,588	-		BBR_RS19445	0.49	+0.8
2,145,594	+		BBR_RS19445	0.50	-0.9
2,145,594	+		BBR_RS19445	0.50	-2.2
2,145,596	+		BBR_RS19445	0.50	-0.7
2,145,596	+		BBR_RS19445	0.50	+1.1
2,145,596	+		BBR_RS19445	0.50	-0.6
2,145,596	+		BBR_RS19445	0.50	+0.4
2,145,596	+		BBR_RS19445	0.50	+1.1
2,145,598	+		BBR_RS19445	0.50	-1.9
2,145,598	+		BBR_RS19445	0.50	+0.7
2,145,599	+		BBR_RS19445	0.50	-0.3
2,145,601	+		BBR_RS19445	0.51	+0.2
2,145,602	-		BBR_RS19445	0.51	-1.2
2,145,607	-		BBR_RS19445	0.51	+0.8
2,145,607	-		BBR_RS19445	0.51	+0.5
2,145,607	-		BBR_RS19445	0.51	+1.9
2,145,609	-		BBR_RS19445	0.51	-1.1
2,145,609	-		BBR_RS19445	0.51	+0.2
2,145,609	-		BBR_RS19445	0.51	-0.3
2,145,609	-		BBR_RS19445	0.51	-2.1
2,145,628	+		BBR_RS19445	0.53	-1.2
2,145,636	+		BBR_RS19445	0.54	-0.1
2,145,654	-		BBR_RS19445	0.55	-0.1
2,145,660	+		BBR_RS19445	0.56	+0.5
2,145,662	+		BBR_RS19445	0.56	-1.5
2,145,741	+		BBR_RS19445	0.63	-1.9
2,145,743	-		BBR_RS19445	0.63	+0.8
2,145,749	-		BBR_RS19445	0.64	-0.1
2,145,772	-		BBR_RS19445	0.66	-1.7
2,145,772	-		BBR_RS19445	0.66	+1.6
2,145,784	+		BBR_RS19445	0.67	+0.9
2,145,784	+		BBR_RS19445	0.67	+1.6
2,145,784	+		BBR_RS19445	0.67	-0.8
2,145,784	+		BBR_RS19445	0.67	+0.1
2,145,789	+		BBR_RS19445	0.67	-1.2
2,145,792	-		BBR_RS19445	0.67	+1.3
2,145,792	-		BBR_RS19445	0.67	-1.3
2,145,817	+		BBR_RS19445	0.70	+2.7
2,145,817	+		BBR_RS19445	0.70	+1.5
2,145,825	-		BBR_RS19445	0.70	-0.4
2,145,826	-		BBR_RS19445	0.70	-1.7
2,145,834	+		BBR_RS19445	0.71	-1.7
2,145,834	+		BBR_RS19445	0.71	+1.5
2,145,850	+		BBR_RS19445	0.72	-1.0
2,145,850	+		BBR_RS19445	0.72	-0.5
2,145,850	+		BBR_RS19445	0.72	+3.4
2,145,861	+		BBR_RS19445	0.73	-0.5
2,145,868	-		BBR_RS19445	0.74	-0.8
2,145,868	-		BBR_RS19445	0.74	-0.7
2,145,883	+		BBR_RS19445	0.75	-0.0
2,145,883	+		BBR_RS19445	0.75	-0.2
2,145,891	-		BBR_RS19445	0.76	+1.5
2,145,907	-		BBR_RS19445	0.78	-2.6
2,145,912	-		BBR_RS19445	0.78	-0.2
2,145,915	-		BBR_RS19445	0.78	+0.3
2,145,944	-		BBR_RS19445	0.81	+0.6
2,145,972	+		BBR_RS19445	0.83	+0.5
2,145,982	+		BBR_RS19445	0.84	-0.3
2,145,982	+		BBR_RS19445	0.84	+0.2
2,145,982	+		BBR_RS19445	0.84	-0.5
2,145,982	+		BBR_RS19445	0.84	+2.5
2,145,987	+		BBR_RS19445	0.85	+0.0
2,145,990	+		BBR_RS19445	0.85	-1.4
2,145,995	-		BBR_RS19445	0.85	-0.9
2,145,997	+		BBR_RS19445	0.85	-0.3
2,146,001	+		BBR_RS19445	0.86	-1.6
2,146,009	-		BBR_RS19445	0.87	-0.4
2,146,009	-		BBR_RS19445	0.87	-0.1
2,146,016	-		BBR_RS19445	0.87	+0.3
2,146,030	+		BBR_RS19445	0.88	+0.3
2,146,037	+		BBR_RS19445	0.89	-0.2
2,146,060	-				-2.4
2,146,064	+				-1.7
2,146,088	+				-2.5
2,146,096	-				+1.6
2,146,096	-				+1.3
2,146,096	-				+0.4
2,146,107	-				+0.5
2,146,107	-				+0.7
2,146,124	+				-1.7
2,146,137	-				-0.2
2,146,146	+				-0.7
2,146,146	+				+0.5
2,146,154	-				+0.0
2,146,162	-				-2.5
2,146,217	-				+1.2
2,146,238	+				+1.0
2,146,238	+				+0.9
2,146,241	-				-0.0
2,146,241	-				-1.0
2,146,241	-				+0.0
2,146,241	-				+0.7
2,146,241	-				+0.9
2,146,243	+				+1.0
2,146,243	-				-0.2
2,146,243	-				+0.3
2,146,251	-				-2.3
2,146,327	-				-0.9
2,146,359	-				-1.3
2,146,364	-				+0.4
2,146,368	+				-0.5
2,146,368	+				-0.9
2,146,368	+				+1.3
2,146,368	+				-1.3
2,146,368	+				+1.4
2,146,373	+				-0.4
2,146,376	-				+0.8
2,146,376	-				-0.2
2,146,376	-				-1.2
2,146,376	-				-2.1
2,146,376	-				+0.9
2,146,388	-				-0.3
2,146,394	+				+1.5
2,146,545	-		BBR_RS19450	0.16	-0.6
2,146,856	-		BBR_RS19450	0.35	+0.2
2,146,880	-		BBR_RS19450	0.36	-2.0
2,148,017	-				+2.6
2,148,017	-				+0.0
2,148,701	+				+0.1
2,148,723	-				-0.1
2,148,723	-				-2.0
2,148,734	+				-0.4
2,148,764	+				+0.4
2,148,772	-				-0.6
2,148,787	+				-2.3
2,148,787	+				-0.5
2,148,787	+				-0.9
2,148,795	-				+1.7
2,148,800	+				-2.0
2,148,833	+				-0.1
2,148,889	-				-1.2