Strain Fitness in Bifidobacterium breve UCC2003 around BBR_RS18795

Experiment: diet=StandardDiet; sample=FecalPellet; mouse1; day4

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	diet=StandardDiet; sample=FecalPellet; mouse1; day4
2,007,973	+		BBR_RS18790	0.62	+1.4
2,007,985	-		BBR_RS18790	0.63	+1.1
2,007,991	+		BBR_RS18790	0.63	-1.3
2,008,029	+		BBR_RS18790	0.65	+1.8
2,008,050	+		BBR_RS18790	0.66	-1.7
2,008,054	+		BBR_RS18790	0.66	+0.6
2,008,056	+		BBR_RS18790	0.66	+0.9
2,008,059	+		BBR_RS18790	0.66	+0.2
2,008,065	+		BBR_RS18790	0.67	-0.7
2,008,106	+		BBR_RS18790	0.68	-0.8
2,008,107	-		BBR_RS18790	0.68	-1.5
2,008,108	-		BBR_RS18790	0.69	-0.7
2,008,121	+		BBR_RS18790	0.69	+1.0
2,008,121	+		BBR_RS18790	0.69	-0.1
2,008,121	+		BBR_RS18790	0.69	-0.3
2,008,122	+		BBR_RS18790	0.69	-1.6
2,008,122	+		BBR_RS18790	0.69	-0.1
2,008,122	-		BBR_RS18790	0.69	+0.6
2,008,130	-		BBR_RS18790	0.70	+0.3
2,008,131	+		BBR_RS18790	0.70	+0.9
2,008,131	+		BBR_RS18790	0.70	+0.4
2,008,156	+		BBR_RS18790	0.71	+1.5
2,008,187	-		BBR_RS18790	0.72	+0.6
2,008,187	-		BBR_RS18790	0.72	+0.7
2,008,193	+		BBR_RS18790	0.72	-0.6
2,008,193	+		BBR_RS18790	0.72	-0.4
2,008,208	+		BBR_RS18790	0.73	-0.3
2,008,208	+		BBR_RS18790	0.73	+1.1
2,008,208	+		BBR_RS18790	0.73	-0.1
2,008,216	-		BBR_RS18790	0.73	-0.2
2,008,216	-		BBR_RS18790	0.73	+0.2
2,008,221	+		BBR_RS18790	0.74	-1.3
2,008,230	+		BBR_RS18790	0.74	-0.2
2,008,230	+		BBR_RS18790	0.74	-1.3
2,008,230	+		BBR_RS18790	0.74	+0.8
2,008,236	-		BBR_RS18790	0.74	+0.1
2,008,236	-		BBR_RS18790	0.74	+0.8
2,008,238	-		BBR_RS18790	0.74	-0.3
2,008,238	-		BBR_RS18790	0.74	-0.9
2,008,238	-		BBR_RS18790	0.74	-0.7
2,008,246	+		BBR_RS18790	0.75	-0.8
2,008,261	-		BBR_RS18790	0.76	-0.4
2,008,309	-		BBR_RS18790	0.78	+0.3
2,008,311	+		BBR_RS18790	0.78	+0.6
2,008,311	+		BBR_RS18790	0.78	-0.9
2,008,311	+		BBR_RS18790	0.78	-1.9
2,008,311	+		BBR_RS18790	0.78	-2.0
2,008,319	-		BBR_RS18790	0.78	+0.3
2,008,319	-		BBR_RS18790	0.78	+1.5
2,008,319	-		BBR_RS18790	0.78	+0.9
2,008,319	-		BBR_RS18790	0.78	-0.4
2,008,319	-		BBR_RS18790	0.78	-0.1
2,008,319	-		BBR_RS18790	0.78	-2.1
2,008,319	-		BBR_RS18790	0.78	+1.2
2,008,319	-		BBR_RS18790	0.78	+0.0
2,008,319	-		BBR_RS18790	0.78	+0.8
2,008,327	-		BBR_RS18790	0.79	+0.8
2,008,407	-		BBR_RS18790	0.82	-1.2
2,008,409	+		BBR_RS18790	0.82	+3.1
2,008,409	+		BBR_RS18790	0.82	-0.2
2,008,409	+		BBR_RS18790	0.82	+2.2
2,008,409	+		BBR_RS18790	0.82	+0.4
2,008,409	+		BBR_RS18790	0.82	-1.0
2,008,410	+		BBR_RS18790	0.82	-0.1
2,008,410	+		BBR_RS18790	0.82	-0.2
2,008,416	-		BBR_RS18790	0.83	-1.8
2,008,416	-		BBR_RS18790	0.83	+0.5
2,008,417	-		BBR_RS18790	0.83	+0.1
2,008,434	-		BBR_RS18790	0.83	-0.0
2,008,434	-		BBR_RS18790	0.83	-1.2
2,008,434	-		BBR_RS18790	0.83	-1.6
2,008,464	+		BBR_RS18790	0.85	+0.1
2,008,464	+		BBR_RS18790	0.85	-0.2
2,008,464	-		BBR_RS18790	0.85	-0.9
2,008,472	+		BBR_RS18790	0.85	-0.0
2,008,472	+		BBR_RS18790	0.85	-1.1
2,008,472	-		BBR_RS18790	0.85	+1.0
2,008,477	+		BBR_RS18790	0.85	+0.6
2,008,479	+		BBR_RS18790	0.86	-0.7
2,008,480	-		BBR_RS18790	0.86	-0.6
2,008,480	-		BBR_RS18790	0.86	+2.6
2,008,480	-		BBR_RS18790	0.86	-2.3
2,008,494	+		BBR_RS18790	0.86	-0.7
2,008,494	+		BBR_RS18790	0.86	+1.4
2,008,494	+		BBR_RS18790	0.86	-1.7
2,008,502	+		BBR_RS18790	0.87	+0.1
2,008,502	+		BBR_RS18790	0.87	-0.7
2,008,507	-		BBR_RS18790	0.87	+1.9
2,008,507	-		BBR_RS18790	0.87	+0.2
2,008,509	-		BBR_RS18790	0.87	-0.7
2,008,521	+		BBR_RS18790	0.87	+0.8
2,008,524	-		BBR_RS18790	0.88	+0.5
2,008,529	-		BBR_RS18790	0.88	-2.6
2,008,596	+				+0.7
2,008,596	+				+0.1
2,008,596	+				-0.9
2,008,596	+				+0.3
2,008,604	-				-0.7
2,008,604	-				-1.5
2,008,604	-				-0.7
2,008,617	+				-0.4
2,008,617	+				+1.1
2,008,625	-				+0.5
2,008,647	+				-0.6
2,008,647	+				+1.0
2,008,647	+				+0.9
2,008,655	-				-1.4
2,008,686	-				-1.0
2,008,697	-				+0.4
2,008,725	+				+0.7
2,008,725	+				+0.2
2,008,725	+				-1.1
2,008,725	+				-2.4
2,008,725	+				-1.9
2,008,733	-				+0.0
2,008,733	-				+3.1
2,008,733	-				-0.6
2,008,733	-				-0.4
2,008,733	-				-0.2
2,008,733	-				-2.6
2,008,739	+				-0.6
2,008,800	-				-0.4
2,008,809	+				-0.6
2,008,854	-				+0.7
2,008,869	+				-0.2
2,008,930	-				+2.6
2,008,963	-				-1.0
2,008,963	-				+0.5
2,009,079	+		BBR_RS18795	0.14	-0.7
2,009,337	-		BBR_RS18795	0.42	-1.1
2,009,372	-		BBR_RS18795	0.46	+0.6
2,009,425	+		BBR_RS18795	0.52	+0.9
2,009,479	+		BBR_RS18795	0.57	+0.6
2,009,483	-		BBR_RS18795	0.58	-0.2
2,009,540	+		BBR_RS18795	0.64	+1.9
2,009,571	+		BBR_RS18795	0.68	+2.3
2,009,579	-		BBR_RS18795	0.68	+0.9
2,009,620	-		BBR_RS18795	0.73	-0.7
2,009,629	+		BBR_RS18795	0.74	-0.3
2,009,767	-		BBR_RS18795	0.89	-1.0
2,009,776	-				-0.2
2,009,788	-				-1.9
2,009,795	-				-0.6
2,009,795	-				-1.4
2,009,819	-				-1.0
2,009,824	-				+0.2
2,009,845	+				-0.3
2,009,865	-				-2.2
2,009,868	-				-0.4
2,009,924	-				-3.9
2,009,927	+				-0.3
2,009,935	-				+1.9
2,009,935	-				-1.5
2,009,936	+				+0.6
2,009,936	+				+0.3
2,009,940	-				+0.8
2,009,957	-				+1.1
2,010,011	-				-0.1
2,010,011	-				+0.3
2,010,036	-				-0.4
2,010,036	-				-0.1
2,010,083	-				-1.2
2,010,083	-				+1.8
2,010,083	-				-0.6
2,010,083	-				-0.0
2,010,083	-				+0.7
2,010,106	-		BBR_RS18800	0.13	+0.6
2,010,113	-		BBR_RS18800	0.15	-1.1
2,010,138	-		BBR_RS18800	0.19	+0.3
2,010,138	-		BBR_RS18800	0.19	-0.1
2,010,142	-		BBR_RS18800	0.20	+1.0
2,010,142	-		BBR_RS18800	0.20	+1.0
2,010,143	-		BBR_RS18800	0.20	+2.3
2,010,158	-		BBR_RS18800	0.23	+2.0
2,010,174	-		BBR_RS18800	0.26	+0.1
2,010,196	-		BBR_RS18800	0.30	-0.5
2,010,196	-		BBR_RS18800	0.30	+2.6