Strain Fitness in Bifidobacterium breve UCC2003 around BBR_RS13170

Experiment: diet=StandardDiet; sample=FecalPellet; mouse1; day4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBBR_RS13165 and BBR_RS13170 are separated by 191 nucleotidesBBR_RS13170 and BBR_RS13175 are separated by 39 nucleotides BBR_RS13165: BBR_RS13165 - amino acid permease, at 729,134 to 730,591 _RS13165 BBR_RS13170: BBR_RS13170 - alanine racemase, at 730,783 to 732,141 _RS13170 BBR_RS13175: BBR_RS13175 - deoxyguanosinetriphosphate triphosphohydrolase, at 732,181 to 733,467 _RS13175 Position (kb) 730 731 732 733Strain fitness (log2 ratio) -2 -1 0 1 2at 729.788 kb on - strand, within BBR_RS13165at 729.794 kb on + strand, within BBR_RS13165at 729.846 kb on - strand, within BBR_RS13165at 729.846 kb on - strand, within BBR_RS13165at 729.928 kb on - strand, within BBR_RS13165at 729.997 kb on - strand, within BBR_RS13165at 730.020 kb on - strand, within BBR_RS13165at 730.066 kb on + strand, within BBR_RS13165at 730.070 kb on - strand, within BBR_RS13165at 730.189 kb on + strand, within BBR_RS13165at 730.189 kb on + strand, within BBR_RS13165at 730.196 kb on + strand, within BBR_RS13165at 730.247 kb on + strand, within BBR_RS13165at 730.325 kb on + strand, within BBR_RS13165at 730.333 kb on - strand, within BBR_RS13165at 730.368 kb on + strand, within BBR_RS13165at 730.368 kb on + strand, within BBR_RS13165at 730.376 kb on - strand, within BBR_RS13165at 730.376 kb on - strand, within BBR_RS13165at 730.424 kb on - strand, within BBR_RS13165at 730.451 kb on - strandat 730.484 kb on - strandat 730.518 kb on - strandat 730.532 kb on + strandat 730.532 kb on + strandat 730.540 kb on - strandat 730.540 kb on - strandat 730.540 kb on - strandat 730.670 kb on + strandat 730.827 kb on + strandat 730.827 kb on + strandat 730.827 kb on + strandat 730.827 kb on + strandat 732.136 kb on + strandat 732.136 kb on + strandat 732.144 kb on - strandat 732.144 kb on - strandat 732.144 kb on - strandat 732.144 kb on - strandat 732.171 kb on + strandat 732.171 kb on + strandat 732.215 kb on - strandat 732.222 kb on + strandat 732.230 kb on - strandat 732.269 kb on + strandat 732.270 kb on + strandat 732.278 kb on - strandat 732.278 kb on - strandat 732.310 kb on - strand, within BBR_RS13175at 732.343 kb on - strand, within BBR_RS13175at 732.391 kb on + strand, within BBR_RS13175at 732.394 kb on - strand, within BBR_RS13175at 732.412 kb on - strand, within BBR_RS13175at 732.423 kb on - strand, within BBR_RS13175at 732.450 kb on - strand, within BBR_RS13175at 732.513 kb on + strand, within BBR_RS13175at 732.574 kb on + strand, within BBR_RS13175at 732.641 kb on + strand, within BBR_RS13175at 732.714 kb on + strand, within BBR_RS13175at 732.763 kb on + strand, within BBR_RS13175at 732.851 kb on + strand, within BBR_RS13175at 732.858 kb on + strand, within BBR_RS13175at 732.977 kb on + strand, within BBR_RS13175at 732.992 kb on - strand, within BBR_RS13175at 733.005 kb on + strand, within BBR_RS13175at 733.015 kb on + strand, within BBR_RS13175at 733.020 kb on + strand, within BBR_RS13175at 733.028 kb on - strand, within BBR_RS13175at 733.028 kb on - strand, within BBR_RS13175at 733.028 kb on - strand, within BBR_RS13175at 733.048 kb on + strand, within BBR_RS13175

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Per-strain Table

Position Strand Gene LocusTag Fraction diet=StandardDiet; sample=FecalPellet; mouse1; day4
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729,788 - BBR_RS13165 0.45 -1.2
729,794 + BBR_RS13165 0.45 -0.8
729,846 - BBR_RS13165 0.49 +0.3
729,846 - BBR_RS13165 0.49 +0.1
729,928 - BBR_RS13165 0.54 +0.5
729,997 - BBR_RS13165 0.59 +1.7
730,020 - BBR_RS13165 0.61 +0.5
730,066 + BBR_RS13165 0.64 +0.7
730,070 - BBR_RS13165 0.64 -0.9
730,189 + BBR_RS13165 0.72 +1.6
730,189 + BBR_RS13165 0.72 +2.4
730,196 + BBR_RS13165 0.73 +0.4
730,247 + BBR_RS13165 0.76 +0.2
730,325 + BBR_RS13165 0.82 +2.2
730,333 - BBR_RS13165 0.82 -0.8
730,368 + BBR_RS13165 0.85 +2.1
730,368 + BBR_RS13165 0.85 +1.5
730,376 - BBR_RS13165 0.85 +0.4
730,376 - BBR_RS13165 0.85 -1.3
730,424 - BBR_RS13165 0.88 +0.6
730,451 - -0.2
730,484 - +1.0
730,518 - +0.6
730,532 + -1.6
730,532 + +2.0
730,540 - +0.6
730,540 - -1.0
730,540 - -0.9
730,670 + -2.1
730,827 + -2.3
730,827 + -2.0
730,827 + -1.4
730,827 + -0.9
732,136 + +0.1
732,136 + +0.1
732,144 - -0.6
732,144 - -0.4
732,144 - +0.1
732,144 - -0.1
732,171 + -0.9
732,171 + -0.5
732,215 - +2.7
732,222 + +1.0
732,230 - +0.4
732,269 + -0.3
732,270 + +0.3
732,278 - +0.4
732,278 - -1.3
732,310 - BBR_RS13175 0.10 +0.9
732,343 - BBR_RS13175 0.13 +0.9
732,391 + BBR_RS13175 0.16 -0.2
732,394 - BBR_RS13175 0.17 -2.2
732,412 - BBR_RS13175 0.18 +0.3
732,423 - BBR_RS13175 0.19 -0.3
732,450 - BBR_RS13175 0.21 +0.0
732,513 + BBR_RS13175 0.26 +2.4
732,574 + BBR_RS13175 0.31 +0.2
732,641 + BBR_RS13175 0.36 -0.7
732,714 + BBR_RS13175 0.41 -1.0
732,763 + BBR_RS13175 0.45 +0.1
732,851 + BBR_RS13175 0.52 +0.7
732,858 + BBR_RS13175 0.53 -0.0
732,977 + BBR_RS13175 0.62 -1.3
732,992 - BBR_RS13175 0.63 -0.8
733,005 + BBR_RS13175 0.64 -1.2
733,015 + BBR_RS13175 0.65 -0.7
733,020 + BBR_RS13175 0.65 +0.2
733,028 - BBR_RS13175 0.66 +0.4
733,028 - BBR_RS13175 0.66 +0.9
733,028 - BBR_RS13175 0.66 -1.8
733,048 + BBR_RS13175 0.67 -0.2

Or see this region's nucleotide sequence