Strain Fitness in Bifidobacterium breve UCC2003 around BBR_RS12940

Experiment: diet=StandardDiet; sample=FecalPellet; mouse1; day4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBBR_RS12935 and BBR_RS12940 are separated by 400 nucleotidesBBR_RS12940 and BBR_RS12945 are separated by 234 nucleotides BBR_RS12935: BBR_RS12935 - A/G-specific adenine glycosylase, at 653,605 to 654,567 _RS12935 BBR_RS12940: BBR_RS12940 - hypothetical protein, at 654,968 to 655,549 _RS12940 BBR_RS12945: BBR_RS12945 - DNA-directed RNA polymerase subunit beta, at 655,784 to 659,347 _RS12945 Position (kb) 654 655 656Strain fitness (log2 ratio) -2 -1 0 1 2 3at 653.977 kb on + strand, within BBR_RS12935at 653.977 kb on + strand, within BBR_RS12935at 653.977 kb on + strand, within BBR_RS12935at 653.977 kb on + strand, within BBR_RS12935at 653.977 kb on + strand, within BBR_RS12935at 653.977 kb on + strand, within BBR_RS12935at 653.985 kb on - strand, within BBR_RS12935at 653.985 kb on - strand, within BBR_RS12935at 654.052 kb on - strand, within BBR_RS12935at 654.052 kb on - strand, within BBR_RS12935at 654.084 kb on - strand, within BBR_RS12935at 654.110 kb on - strand, within BBR_RS12935at 654.123 kb on + strand, within BBR_RS12935at 654.124 kb on + strand, within BBR_RS12935at 654.124 kb on - strand, within BBR_RS12935at 654.147 kb on + strand, within BBR_RS12935at 654.147 kb on + strand, within BBR_RS12935at 654.161 kb on + strand, within BBR_RS12935at 654.190 kb on + strand, within BBR_RS12935at 654.195 kb on + strand, within BBR_RS12935at 654.195 kb on - strand, within BBR_RS12935at 654.226 kb on - strand, within BBR_RS12935at 654.240 kb on - strand, within BBR_RS12935at 654.245 kb on + strand, within BBR_RS12935at 654.260 kb on - strand, within BBR_RS12935at 654.260 kb on - strand, within BBR_RS12935at 654.262 kb on + strand, within BBR_RS12935at 654.270 kb on - strand, within BBR_RS12935at 654.312 kb on + strand, within BBR_RS12935at 654.332 kb on + strand, within BBR_RS12935at 654.332 kb on + strand, within BBR_RS12935at 654.369 kb on + strand, within BBR_RS12935at 654.377 kb on + strand, within BBR_RS12935at 654.382 kb on + strand, within BBR_RS12935at 654.387 kb on + strand, within BBR_RS12935at 654.417 kb on - strand, within BBR_RS12935at 654.480 kb on - strandat 654.535 kb on - strandat 654.539 kb on + strandat 654.555 kb on + strandat 654.577 kb on + strandat 654.577 kb on + strandat 654.577 kb on + strandat 654.577 kb on + strandat 654.577 kb on + strandat 654.577 kb on + strandat 654.585 kb on - strandat 654.585 kb on - strandat 654.585 kb on - strandat 654.585 kb on - strandat 654.587 kb on - strandat 654.587 kb on - strandat 654.587 kb on - strandat 654.611 kb on - strandat 654.611 kb on - strandat 654.620 kb on - strandat 654.620 kb on - strandat 654.626 kb on - strandat 654.631 kb on + strandat 654.703 kb on + strandat 654.718 kb on - strandat 654.720 kb on - strandat 654.722 kb on + strandat 654.727 kb on + strandat 654.727 kb on + strandat 654.727 kb on + strandat 654.728 kb on - strandat 654.735 kb on - strandat 654.740 kb on - strandat 654.772 kb on + strandat 654.800 kb on - strandat 654.853 kb on + strandat 654.897 kb on + strandat 654.932 kb on + strandat 654.949 kb on + strandat 654.968 kb on + strandat 655.004 kb on - strandat 655.028 kb on - strand, within BBR_RS12940at 655.039 kb on + strand, within BBR_RS12940at 655.052 kb on - strand, within BBR_RS12940at 655.052 kb on - strand, within BBR_RS12940at 655.065 kb on - strand, within BBR_RS12940at 655.065 kb on - strand, within BBR_RS12940at 655.082 kb on - strand, within BBR_RS12940at 655.094 kb on + strand, within BBR_RS12940at 655.143 kb on + strand, within BBR_RS12940at 655.145 kb on + strand, within BBR_RS12940at 655.145 kb on + strand, within BBR_RS12940at 655.153 kb on - strand, within BBR_RS12940at 655.160 kb on + strand, within BBR_RS12940at 655.186 kb on - strand, within BBR_RS12940at 655.192 kb on + strand, within BBR_RS12940at 655.215 kb on + strand, within BBR_RS12940at 655.299 kb on + strand, within BBR_RS12940at 655.322 kb on + strand, within BBR_RS12940at 655.322 kb on + strand, within BBR_RS12940at 655.330 kb on - strand, within BBR_RS12940at 655.330 kb on - strand, within BBR_RS12940at 655.337 kb on - strand, within BBR_RS12940at 655.366 kb on - strand, within BBR_RS12940at 655.369 kb on + strand, within BBR_RS12940at 655.379 kb on + strand, within BBR_RS12940at 655.386 kb on + strand, within BBR_RS12940at 655.386 kb on + strand, within BBR_RS12940at 655.435 kb on + strand, within BBR_RS12940at 655.455 kb on + strand, within BBR_RS12940at 655.458 kb on - strand, within BBR_RS12940at 655.463 kb on - strand, within BBR_RS12940at 655.463 kb on - strand, within BBR_RS12940at 655.468 kb on + strand, within BBR_RS12940at 655.493 kb on + strandat 655.513 kb on + strandat 655.522 kb on - strandat 655.556 kb on - strandat 655.557 kb on + strandat 655.557 kb on + strandat 655.562 kb on + strandat 655.570 kb on - strandat 655.579 kb on + strandat 655.579 kb on + strandat 655.579 kb on + strandat 655.587 kb on - strandat 655.612 kb on - strandat 655.669 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction diet=StandardDiet; sample=FecalPellet; mouse1; day4
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653,977 + BBR_RS12935 0.39 -0.0
653,977 + BBR_RS12935 0.39 +0.2
653,977 + BBR_RS12935 0.39 +0.1
653,977 + BBR_RS12935 0.39 +0.2
653,977 + BBR_RS12935 0.39 +0.4
653,977 + BBR_RS12935 0.39 +0.2
653,985 - BBR_RS12935 0.39 +2.2
653,985 - BBR_RS12935 0.39 +0.2
654,052 - BBR_RS12935 0.46 -0.3
654,052 - BBR_RS12935 0.46 +0.1
654,084 - BBR_RS12935 0.50 -0.5
654,110 - BBR_RS12935 0.52 -0.6
654,123 + BBR_RS12935 0.54 -0.8
654,124 + BBR_RS12935 0.54 -0.8
654,124 - BBR_RS12935 0.54 -0.1
654,147 + BBR_RS12935 0.56 -1.7
654,147 + BBR_RS12935 0.56 +0.1
654,161 + BBR_RS12935 0.58 -0.4
654,190 + BBR_RS12935 0.61 -0.4
654,195 + BBR_RS12935 0.61 +0.0
654,195 - BBR_RS12935 0.61 +0.1
654,226 - BBR_RS12935 0.64 +0.6
654,240 - BBR_RS12935 0.66 -0.2
654,245 + BBR_RS12935 0.66 +0.4
654,260 - BBR_RS12935 0.68 +3.4
654,260 - BBR_RS12935 0.68 +3.3
654,262 + BBR_RS12935 0.68 +0.0
654,270 - BBR_RS12935 0.69 -0.6
654,312 + BBR_RS12935 0.73 -1.7
654,332 + BBR_RS12935 0.75 +2.1
654,332 + BBR_RS12935 0.75 -0.9
654,369 + BBR_RS12935 0.79 +1.1
654,377 + BBR_RS12935 0.80 +0.6
654,382 + BBR_RS12935 0.81 -0.0
654,387 + BBR_RS12935 0.81 -2.6
654,417 - BBR_RS12935 0.84 -0.3
654,480 - +0.6
654,535 - -1.4
654,539 + +0.6
654,555 + +0.4
654,577 + -0.8
654,577 + -0.4
654,577 + +0.8
654,577 + +0.7
654,577 + -0.2
654,577 + +0.5
654,585 - -1.4
654,585 - +0.9
654,585 - -0.6
654,585 - -0.3
654,587 - -1.1
654,587 - +0.1
654,587 - +1.0
654,611 - +0.9
654,611 - +0.3
654,620 - -0.5
654,620 - +1.1
654,626 - +0.3
654,631 + +0.5
654,703 + -0.6
654,718 - +0.1
654,720 - -1.4
654,722 + -0.9
654,727 + +1.2
654,727 + -0.9
654,727 + +0.7
654,728 - +0.7
654,735 - +1.4
654,740 - +0.2
654,772 + -2.4
654,800 - +1.5
654,853 + +0.2
654,897 + -1.1
654,932 + +0.4
654,949 + +0.8
654,968 + +0.4
655,004 - +0.4
655,028 - BBR_RS12940 0.10 -0.7
655,039 + BBR_RS12940 0.12 -0.9
655,052 - BBR_RS12940 0.14 -1.7
655,052 - BBR_RS12940 0.14 -0.9
655,065 - BBR_RS12940 0.17 +0.8
655,065 - BBR_RS12940 0.17 +0.9
655,082 - BBR_RS12940 0.20 -0.6
655,094 + BBR_RS12940 0.22 -0.9
655,143 + BBR_RS12940 0.30 -2.0
655,145 + BBR_RS12940 0.30 -0.7
655,145 + BBR_RS12940 0.30 -1.9
655,153 - BBR_RS12940 0.32 -0.6
655,160 + BBR_RS12940 0.33 -2.4
655,186 - BBR_RS12940 0.37 -1.2
655,192 + BBR_RS12940 0.38 -1.6
655,215 + BBR_RS12940 0.42 +0.4
655,299 + BBR_RS12940 0.57 -0.4
655,322 + BBR_RS12940 0.61 -1.8
655,322 + BBR_RS12940 0.61 -2.0
655,330 - BBR_RS12940 0.62 +0.1
655,330 - BBR_RS12940 0.62 +0.3
655,337 - BBR_RS12940 0.63 -2.2
655,366 - BBR_RS12940 0.68 -1.5
655,369 + BBR_RS12940 0.69 -0.7
655,379 + BBR_RS12940 0.71 -1.1
655,386 + BBR_RS12940 0.72 -0.8
655,386 + BBR_RS12940 0.72 -1.8
655,435 + BBR_RS12940 0.80 -0.9
655,455 + BBR_RS12940 0.84 -2.2
655,458 - BBR_RS12940 0.84 -1.5
655,463 - BBR_RS12940 0.85 -1.2
655,463 - BBR_RS12940 0.85 -1.2
655,468 + BBR_RS12940 0.86 -1.9
655,493 + +0.6
655,513 + +1.2
655,522 - -0.1
655,556 - +0.4
655,557 + +0.6
655,557 + +0.4
655,562 + +1.1
655,570 - +0.6
655,579 + +0.2
655,579 + -2.0
655,579 + +0.5
655,587 - -0.4
655,612 - +0.1
655,669 + -2.4

Or see this region's nucleotide sequence