Strain Fitness in Bifidobacterium breve UCC2003 around BBR_RS12895

Experiment: diet=StandardDiet; sample=FecalPellet; mouse1; day4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBBR_RS12890 and BBR_RS12895 are separated by 145 nucleotidesBBR_RS12895 and BBR_RS12900 are separated by 305 nucleotides BBR_RS12890: BBR_RS12890 - NADH:flavin oxidoreductase/NADH oxidase, at 643,482 to 644,786 _RS12890 BBR_RS12895: BBR_RS12895 - quinone-dependent dihydroorotate dehydrogenase, at 644,932 to 646,083 _RS12895 BBR_RS12900: BBR_RS12900 - DeoR/GlpR transcriptional regulator, at 646,389 to 647,192 _RS12900 Position (kb) 644 645 646 647Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 643.982 kb on + strand, within BBR_RS12890at 643.990 kb on - strand, within BBR_RS12890at 643.996 kb on + strand, within BBR_RS12890at 644.027 kb on + strand, within BBR_RS12890at 644.029 kb on - strand, within BBR_RS12890at 644.029 kb on - strand, within BBR_RS12890at 644.035 kb on - strand, within BBR_RS12890at 644.039 kb on - strand, within BBR_RS12890at 644.068 kb on - strand, within BBR_RS12890at 644.096 kb on - strand, within BBR_RS12890at 644.098 kb on + strand, within BBR_RS12890at 644.098 kb on + strand, within BBR_RS12890at 644.158 kb on - strand, within BBR_RS12890at 644.158 kb on - strand, within BBR_RS12890at 644.174 kb on + strand, within BBR_RS12890at 644.174 kb on + strand, within BBR_RS12890at 644.183 kb on - strand, within BBR_RS12890at 644.244 kb on + strand, within BBR_RS12890at 644.244 kb on + strand, within BBR_RS12890at 644.267 kb on + strand, within BBR_RS12890at 644.300 kb on - strand, within BBR_RS12890at 644.313 kb on + strand, within BBR_RS12890at 644.321 kb on - strand, within BBR_RS12890at 644.321 kb on - strand, within BBR_RS12890at 644.360 kb on + strand, within BBR_RS12890at 644.360 kb on + strand, within BBR_RS12890at 644.360 kb on + strand, within BBR_RS12890at 644.378 kb on - strand, within BBR_RS12890at 644.388 kb on + strand, within BBR_RS12890at 644.396 kb on - strand, within BBR_RS12890at 644.436 kb on - strand, within BBR_RS12890at 644.448 kb on + strand, within BBR_RS12890at 644.479 kb on + strand, within BBR_RS12890at 644.492 kb on - strand, within BBR_RS12890at 644.492 kb on - strand, within BBR_RS12890at 644.548 kb on + strand, within BBR_RS12890at 644.615 kb on - strand, within BBR_RS12890at 644.651 kb on + strand, within BBR_RS12890at 644.672 kb on + strandat 644.680 kb on + strandat 644.688 kb on - strandat 644.710 kb on + strandat 644.750 kb on + strandat 644.758 kb on - strandat 644.768 kb on - strandat 644.775 kb on + strandat 644.775 kb on + strandat 644.788 kb on - strandat 644.789 kb on + strandat 644.811 kb on + strandat 644.869 kb on + strandat 644.877 kb on - strandat 644.877 kb on - strandat 644.883 kb on + strandat 644.883 kb on - strandat 644.883 kb on - strandat 644.893 kb on + strandat 644.948 kb on - strandat 645.015 kb on - strandat 645.038 kb on - strandat 645.038 kb on - strandat 645.074 kb on - strand, within BBR_RS12895at 645.074 kb on - strand, within BBR_RS12895at 645.074 kb on - strand, within BBR_RS12895at 645.074 kb on - strand, within BBR_RS12895at 645.094 kb on + strand, within BBR_RS12895at 645.097 kb on - strand, within BBR_RS12895at 645.146 kb on + strand, within BBR_RS12895at 645.151 kb on + strand, within BBR_RS12895at 645.154 kb on - strand, within BBR_RS12895at 645.179 kb on + strand, within BBR_RS12895at 645.187 kb on - strand, within BBR_RS12895at 645.200 kb on + strand, within BBR_RS12895at 645.224 kb on - strand, within BBR_RS12895at 645.234 kb on + strand, within BBR_RS12895at 645.252 kb on - strand, within BBR_RS12895at 645.277 kb on + strand, within BBR_RS12895at 645.279 kb on - strand, within BBR_RS12895at 645.285 kb on - strand, within BBR_RS12895at 645.285 kb on - strand, within BBR_RS12895at 645.285 kb on - strand, within BBR_RS12895at 645.289 kb on + strand, within BBR_RS12895at 645.295 kb on + strand, within BBR_RS12895at 645.314 kb on + strand, within BBR_RS12895at 645.320 kb on - strand, within BBR_RS12895at 645.320 kb on - strand, within BBR_RS12895at 645.326 kb on + strand, within BBR_RS12895at 645.334 kb on - strand, within BBR_RS12895at 645.334 kb on - strand, within BBR_RS12895at 645.334 kb on - strand, within BBR_RS12895at 645.345 kb on - strand, within BBR_RS12895at 645.345 kb on - strand, within BBR_RS12895at 645.347 kb on + strand, within BBR_RS12895at 645.355 kb on - strand, within BBR_RS12895at 645.357 kb on + strand, within BBR_RS12895at 645.357 kb on + strand, within BBR_RS12895at 645.385 kb on - strand, within BBR_RS12895at 645.411 kb on - strand, within BBR_RS12895at 645.444 kb on - strand, within BBR_RS12895at 645.512 kb on + strand, within BBR_RS12895at 645.539 kb on + strand, within BBR_RS12895at 645.596 kb on + strand, within BBR_RS12895at 645.604 kb on - strand, within BBR_RS12895at 645.609 kb on - strand, within BBR_RS12895at 645.609 kb on - strand, within BBR_RS12895at 645.646 kb on + strand, within BBR_RS12895at 645.698 kb on + strand, within BBR_RS12895at 645.706 kb on - strand, within BBR_RS12895at 645.715 kb on + strand, within BBR_RS12895at 645.723 kb on - strand, within BBR_RS12895at 645.726 kb on + strand, within BBR_RS12895at 645.734 kb on - strand, within BBR_RS12895at 645.770 kb on - strand, within BBR_RS12895at 645.875 kb on + strand, within BBR_RS12895at 645.875 kb on + strand, within BBR_RS12895at 645.875 kb on + strand, within BBR_RS12895at 645.883 kb on - strand, within BBR_RS12895at 645.883 kb on - strand, within BBR_RS12895at 645.883 kb on - strand, within BBR_RS12895at 645.883 kb on - strand, within BBR_RS12895at 645.885 kb on - strand, within BBR_RS12895at 645.907 kb on - strand, within BBR_RS12895at 645.911 kb on + strand, within BBR_RS12895at 645.914 kb on - strand, within BBR_RS12895at 645.927 kb on - strand, within BBR_RS12895at 646.013 kb on - strandat 646.026 kb on + strandat 646.034 kb on - strandat 646.034 kb on - strandat 646.090 kb on - strandat 646.111 kb on + strandat 646.173 kb on - strandat 646.173 kb on - strandat 646.177 kb on - strandat 646.219 kb on - strandat 646.234 kb on + strandat 646.308 kb on - strandat 646.308 kb on - strandat 646.592 kb on - strand, within BBR_RS12900at 646.962 kb on + strand, within BBR_RS12900at 647.041 kb on + strand, within BBR_RS12900at 647.049 kb on + strand, within BBR_RS12900

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Per-strain Table

Position Strand Gene LocusTag Fraction diet=StandardDiet; sample=FecalPellet; mouse1; day4
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643,982 + BBR_RS12890 0.38 +0.3
643,990 - BBR_RS12890 0.39 +3.3
643,996 + BBR_RS12890 0.39 +0.8
644,027 + BBR_RS12890 0.42 +0.3
644,029 - BBR_RS12890 0.42 +0.6
644,029 - BBR_RS12890 0.42 +0.5
644,035 - BBR_RS12890 0.42 +1.1
644,039 - BBR_RS12890 0.43 +0.5
644,068 - BBR_RS12890 0.45 +0.3
644,096 - BBR_RS12890 0.47 +0.2
644,098 + BBR_RS12890 0.47 +0.9
644,098 + BBR_RS12890 0.47 +1.1
644,158 - BBR_RS12890 0.52 +1.2
644,158 - BBR_RS12890 0.52 +0.1
644,174 + BBR_RS12890 0.53 -0.7
644,174 + BBR_RS12890 0.53 +0.6
644,183 - BBR_RS12890 0.54 +0.0
644,244 + BBR_RS12890 0.58 -0.7
644,244 + BBR_RS12890 0.58 -0.3
644,267 + BBR_RS12890 0.60 +0.7
644,300 - BBR_RS12890 0.63 -0.9
644,313 + BBR_RS12890 0.64 +0.5
644,321 - BBR_RS12890 0.64 -1.9
644,321 - BBR_RS12890 0.64 +0.3
644,360 + BBR_RS12890 0.67 +0.1
644,360 + BBR_RS12890 0.67 +0.6
644,360 + BBR_RS12890 0.67 -0.2
644,378 - BBR_RS12890 0.69 +1.3
644,388 + BBR_RS12890 0.69 +0.9
644,396 - BBR_RS12890 0.70 -2.1
644,436 - BBR_RS12890 0.73 -1.3
644,448 + BBR_RS12890 0.74 -0.3
644,479 + BBR_RS12890 0.76 -0.4
644,492 - BBR_RS12890 0.77 +0.1
644,492 - BBR_RS12890 0.77 +0.3
644,548 + BBR_RS12890 0.82 +0.9
644,615 - BBR_RS12890 0.87 +0.1
644,651 + BBR_RS12890 0.90 +2.3
644,672 + -1.6
644,680 + -1.5
644,688 - +1.8
644,710 + -0.2
644,750 + +0.4
644,758 - -1.5
644,768 - +0.2
644,775 + -0.2
644,775 + +0.5
644,788 - +1.9
644,789 + -1.4
644,811 + -0.5
644,869 + -0.4
644,877 - -0.3
644,877 - -1.4
644,883 + +0.8
644,883 - +3.1
644,883 - -2.2
644,893 + +0.9
644,948 - -0.7
645,015 - -3.3
645,038 - -2.5
645,038 - -2.5
645,074 - BBR_RS12895 0.12 -2.3
645,074 - BBR_RS12895 0.12 -2.8
645,074 - BBR_RS12895 0.12 -2.4
645,074 - BBR_RS12895 0.12 -1.0
645,094 + BBR_RS12895 0.14 -1.5
645,097 - BBR_RS12895 0.14 +2.0
645,146 + BBR_RS12895 0.19 -1.5
645,151 + BBR_RS12895 0.19 -2.4
645,154 - BBR_RS12895 0.19 -1.8
645,179 + BBR_RS12895 0.21 -2.6
645,187 - BBR_RS12895 0.22 -3.9
645,200 + BBR_RS12895 0.23 -1.9
645,224 - BBR_RS12895 0.25 -0.9
645,234 + BBR_RS12895 0.26 -2.6
645,252 - BBR_RS12895 0.28 -1.3
645,277 + BBR_RS12895 0.30 -1.9
645,279 - BBR_RS12895 0.30 -2.4
645,285 - BBR_RS12895 0.31 -1.6
645,285 - BBR_RS12895 0.31 -2.9
645,285 - BBR_RS12895 0.31 -1.8
645,289 + BBR_RS12895 0.31 -2.6
645,295 + BBR_RS12895 0.32 -1.2
645,314 + BBR_RS12895 0.33 -2.0
645,320 - BBR_RS12895 0.34 -2.5
645,320 - BBR_RS12895 0.34 -4.3
645,326 + BBR_RS12895 0.34 -2.2
645,334 - BBR_RS12895 0.35 -1.7
645,334 - BBR_RS12895 0.35 -2.8
645,334 - BBR_RS12895 0.35 -2.4
645,345 - BBR_RS12895 0.36 -2.1
645,345 - BBR_RS12895 0.36 -2.0
645,347 + BBR_RS12895 0.36 -3.0
645,355 - BBR_RS12895 0.37 -1.9
645,357 + BBR_RS12895 0.37 -1.4
645,357 + BBR_RS12895 0.37 -2.2
645,385 - BBR_RS12895 0.39 -2.4
645,411 - BBR_RS12895 0.42 -1.3
645,444 - BBR_RS12895 0.44 -1.3
645,512 + BBR_RS12895 0.50 -2.4
645,539 + BBR_RS12895 0.53 -1.8
645,596 + BBR_RS12895 0.58 -1.7
645,604 - BBR_RS12895 0.58 -2.7
645,609 - BBR_RS12895 0.59 -1.3
645,609 - BBR_RS12895 0.59 -2.8
645,646 + BBR_RS12895 0.62 -2.1
645,698 + BBR_RS12895 0.66 -2.1
645,706 - BBR_RS12895 0.67 -2.3
645,715 + BBR_RS12895 0.68 -2.6
645,723 - BBR_RS12895 0.69 -2.8
645,726 + BBR_RS12895 0.69 -0.7
645,734 - BBR_RS12895 0.70 -2.5
645,770 - BBR_RS12895 0.73 +1.3
645,875 + BBR_RS12895 0.82 -0.5
645,875 + BBR_RS12895 0.82 -1.6
645,875 + BBR_RS12895 0.82 -0.2
645,883 - BBR_RS12895 0.83 -2.3
645,883 - BBR_RS12895 0.83 -3.3
645,883 - BBR_RS12895 0.83 +1.3
645,883 - BBR_RS12895 0.83 -4.4
645,885 - BBR_RS12895 0.83 -2.4
645,907 - BBR_RS12895 0.85 -2.4
645,911 + BBR_RS12895 0.85 -1.8
645,914 - BBR_RS12895 0.85 -4.6
645,927 - BBR_RS12895 0.86 -0.7
646,013 - -2.4
646,026 + -2.0
646,034 - -3.0
646,034 - -1.4
646,090 - -2.3
646,111 + -0.1
646,173 - +2.5
646,173 - +0.3
646,177 - -1.3
646,219 - +1.5
646,234 + -0.6
646,308 - -0.4
646,308 - -1.1
646,592 - BBR_RS12900 0.25 -0.6
646,962 + BBR_RS12900 0.71 -1.4
647,041 + BBR_RS12900 0.81 -2.6
647,049 + BBR_RS12900 0.82 -2.1

Or see this region's nucleotide sequence