Experiment: diet=StandardDiet; sample=FecalPellet; mouse1; day4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BBR_RS12610 and BBR_RS20720 overlap by 14 nucleotides BBR_RS20720 and BBR_RS12620 are separated by 27 nucleotides BBR_RS12620 and BBR_RS12625 are separated by 459 nucleotides
BBR_RS12610: BBR_RS12610 - capsular polysaccharide biosynthesis protein, at 585,092 to 586,027
_RS12610
BBR_RS20720: BBR_RS20720 - DUF4422 domain-containing protein, at 586,014 to 586,844
_RS20720
BBR_RS12620: BBR_RS12620 - glycosyltransferase family 1 protein, at 586,872 to 587,945
_RS12620
BBR_RS12625: BBR_RS12625 - glycosyltransferase family 1 protein, at 588,405 to 589,493
_RS12625
Position (kb) 586
587
588 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2
3
4 at 585.896 kb on - strand, within BBR_RS12610 at 585.953 kb on - strand at 585.953 kb on - strand at 585.973 kb on - strand at 585.981 kb on + strand at 585.989 kb on - strand at 585.989 kb on - strand at 585.991 kb on - strand at 586.002 kb on + strand at 586.010 kb on - strand at 586.010 kb on - strand at 586.010 kb on - strand at 586.010 kb on - strand at 586.010 kb on - strand at 586.043 kb on - strand at 586.056 kb on - strand at 586.061 kb on + strand at 586.083 kb on - strand at 586.101 kb on - strand, within BBR_RS20720 at 586.153 kb on + strand, within BBR_RS20720 at 586.153 kb on + strand, within BBR_RS20720 at 586.161 kb on - strand, within BBR_RS20720 at 586.171 kb on + strand, within BBR_RS20720 at 586.240 kb on - strand, within BBR_RS20720 at 586.251 kb on - strand, within BBR_RS20720 at 586.272 kb on - strand, within BBR_RS20720 at 586.366 kb on + strand, within BBR_RS20720 at 586.458 kb on - strand, within BBR_RS20720 at 586.458 kb on - strand, within BBR_RS20720 at 586.502 kb on + strand, within BBR_RS20720 at 586.597 kb on + strand, within BBR_RS20720 at 586.636 kb on - strand, within BBR_RS20720 at 586.636 kb on - strand, within BBR_RS20720 at 586.679 kb on - strand, within BBR_RS20720 at 586.789 kb on + strand at 586.789 kb on - strand at 586.819 kb on - strand at 586.819 kb on - strand at 586.855 kb on - strand at 586.888 kb on + strand at 586.888 kb on + strand at 586.896 kb on - strand at 586.901 kb on - strand at 586.906 kb on + strand at 586.906 kb on - strand at 586.908 kb on + strand at 586.916 kb on - strand at 586.921 kb on - strand at 586.924 kb on - strand at 586.951 kb on + strand at 586.959 kb on - strand at 586.969 kb on - strand at 586.969 kb on - strand at 586.982 kb on - strand, within BBR_RS12620 at 586.983 kb on - strand, within BBR_RS12620 at 586.983 kb on - strand, within BBR_RS12620 at 587.001 kb on - strand, within BBR_RS12620 at 587.039 kb on - strand, within BBR_RS12620 at 587.092 kb on - strand, within BBR_RS12620 at 587.092 kb on - strand, within BBR_RS12620 at 587.109 kb on + strand, within BBR_RS12620 at 587.109 kb on + strand, within BBR_RS12620 at 587.135 kb on - strand, within BBR_RS12620 at 587.135 kb on - strand, within BBR_RS12620 at 587.138 kb on + strand, within BBR_RS12620 at 587.139 kb on + strand, within BBR_RS12620 at 587.139 kb on + strand, within BBR_RS12620 at 587.144 kb on + strand, within BBR_RS12620 at 587.144 kb on + strand, within BBR_RS12620 at 587.152 kb on - strand, within BBR_RS12620 at 587.178 kb on - strand, within BBR_RS12620 at 587.178 kb on - strand, within BBR_RS12620 at 587.227 kb on - strand, within BBR_RS12620 at 587.235 kb on + strand, within BBR_RS12620 at 587.248 kb on + strand, within BBR_RS12620 at 587.248 kb on + strand, within BBR_RS12620 at 587.248 kb on + strand, within BBR_RS12620 at 587.254 kb on + strand, within BBR_RS12620 at 587.256 kb on - strand, within BBR_RS12620 at 587.257 kb on - strand, within BBR_RS12620 at 587.318 kb on - strand, within BBR_RS12620 at 587.338 kb on - strand, within BBR_RS12620 at 587.447 kb on + strand, within BBR_RS12620 at 587.470 kb on - strand, within BBR_RS12620 at 587.488 kb on + strand, within BBR_RS12620 at 587.488 kb on + strand, within BBR_RS12620 at 587.530 kb on + strand, within BBR_RS12620 at 587.530 kb on + strand, within BBR_RS12620 at 587.540 kb on + strand, within BBR_RS12620 at 587.550 kb on + strand, within BBR_RS12620 at 587.555 kb on + strand, within BBR_RS12620 at 587.558 kb on + strand, within BBR_RS12620 at 587.563 kb on + strand, within BBR_RS12620 at 587.571 kb on - strand, within BBR_RS12620 at 587.640 kb on - strand, within BBR_RS12620 at 587.648 kb on - strand, within BBR_RS12620 at 587.704 kb on - strand, within BBR_RS12620 at 587.716 kb on - strand, within BBR_RS12620 at 587.758 kb on - strand, within BBR_RS12620 at 587.787 kb on + strand, within BBR_RS12620 at 587.787 kb on + strand, within BBR_RS12620 at 587.828 kb on - strand, within BBR_RS12620 at 587.859 kb on - strand at 587.859 kb on - strand at 587.887 kb on - strand at 587.922 kb on + strand at 587.922 kb on + strand at 587.964 kb on - strand at 587.968 kb on - strand at 587.988 kb on - strand at 588.075 kb on - strand at 588.075 kb on - strand at 588.084 kb on - strand at 588.110 kb on - strand at 588.110 kb on - strand at 588.111 kb on - strand at 588.111 kb on - strand at 588.117 kb on + strand at 588.117 kb on + strand at 588.125 kb on - strand at 588.125 kb on - strand at 588.137 kb on + strand at 588.157 kb on - strand at 588.268 kb on + strand at 588.308 kb on - strand at 588.329 kb on - strand at 588.367 kb on + strand at 588.370 kb on - strand at 588.370 kb on - strand at 588.380 kb on - strand at 588.387 kb on + strand at 588.390 kb on - strand at 588.395 kb on - strand at 588.395 kb on - strand at 588.406 kb on + strand at 588.425 kb on - strand at 588.556 kb on + strand, within BBR_RS12625 at 588.556 kb on + strand, within BBR_RS12625 at 588.561 kb on + strand, within BBR_RS12625 at 588.564 kb on - strand, within BBR_RS12625 at 588.564 kb on - strand, within BBR_RS12625 at 588.569 kb on - strand, within BBR_RS12625 at 588.571 kb on + strand, within BBR_RS12625 at 588.589 kb on - strand, within BBR_RS12625 at 588.589 kb on - strand, within BBR_RS12625 at 588.601 kb on - strand, within BBR_RS12625 at 588.627 kb on - strand, within BBR_RS12625 at 588.632 kb on - strand, within BBR_RS12625 at 588.634 kb on + strand, within BBR_RS12625 at 588.641 kb on - strand, within BBR_RS12625 at 588.641 kb on - strand, within BBR_RS12625 at 588.665 kb on - strand, within BBR_RS12625 at 588.692 kb on + strand, within BBR_RS12625 at 588.722 kb on + strand, within BBR_RS12625 at 588.730 kb on - strand, within BBR_RS12625 at 588.730 kb on - strand, within BBR_RS12625 at 588.730 kb on - strand, within BBR_RS12625 at 588.730 kb on - strand, within BBR_RS12625 at 588.730 kb on - strand, within BBR_RS12625 at 588.773 kb on + strand, within BBR_RS12625 at 588.779 kb on + strand, within BBR_RS12625 at 588.779 kb on + strand, within BBR_RS12625 at 588.779 kb on + strand, within BBR_RS12625 at 588.787 kb on - strand, within BBR_RS12625 at 588.787 kb on - strand, within BBR_RS12625 at 588.787 kb on - strand, within BBR_RS12625 at 588.787 kb on - strand, within BBR_RS12625 at 588.860 kb on + strand, within BBR_RS12625 at 588.944 kb on - strand, within BBR_RS12625
Per-strain Table
Position Strand Gene LocusTag Fraction diet=StandardDiet; sample=FecalPellet; mouse1; day4 remove 585,896 - BBR_RS12610 0.86 -1.7 585,953 - -1.8 585,953 - -2.0 585,973 - -1.1 585,981 + -2.3 585,989 - +1.0 585,989 - -1.4 585,991 - -2.6 586,002 + -2.4 586,010 - +0.4 586,010 - -2.3 586,010 - -0.8 586,010 - -1.3 586,010 - -1.4 586,043 - -1.9 586,056 - -0.5 586,061 + -1.5 586,083 - -1.1 586,101 - BBR_RS20720 0.10 +1.2 586,153 + BBR_RS20720 0.17 -1.2 586,153 + BBR_RS20720 0.17 +0.3 586,161 - BBR_RS20720 0.18 -1.9 586,171 + BBR_RS20720 0.19 -0.2 586,240 - BBR_RS20720 0.27 -2.5 586,251 - BBR_RS20720 0.29 -0.9 586,272 - BBR_RS20720 0.31 -1.2 586,366 + BBR_RS20720 0.42 -1.0 586,458 - BBR_RS20720 0.53 -2.9 586,458 - BBR_RS20720 0.53 -1.1 586,502 + BBR_RS20720 0.59 +1.2 586,597 + BBR_RS20720 0.70 -1.8 586,636 - BBR_RS20720 0.75 +0.1 586,636 - BBR_RS20720 0.75 -1.6 586,679 - BBR_RS20720 0.80 -1.4 586,789 + +0.8 586,789 - +1.0 586,819 - -1.3 586,819 - +0.1 586,855 - -2.0 586,888 + -1.6 586,888 + +0.7 586,896 - -1.0 586,901 - -0.6 586,906 + -2.5 586,906 - -1.1 586,908 + -0.1 586,916 - -2.3 586,921 - -1.4 586,924 - -3.5 586,951 + -1.2 586,959 - -2.3 586,969 - -2.6 586,969 - -3.1 586,982 - BBR_RS12620 0.10 -4.9 586,983 - BBR_RS12620 0.10 -0.8 586,983 - BBR_RS12620 0.10 -2.7 587,001 - BBR_RS12620 0.12 -2.0 587,039 - BBR_RS12620 0.16 -2.4 587,092 - BBR_RS12620 0.20 -1.8 587,092 - BBR_RS12620 0.20 -2.8 587,109 + BBR_RS12620 0.22 -1.8 587,109 + BBR_RS12620 0.22 -0.7 587,135 - BBR_RS12620 0.24 -1.4 587,135 - BBR_RS12620 0.24 -3.5 587,138 + BBR_RS12620 0.25 -1.7 587,139 + BBR_RS12620 0.25 -1.3 587,139 + BBR_RS12620 0.25 -0.3 587,144 + BBR_RS12620 0.25 -1.0 587,144 + BBR_RS12620 0.25 -0.9 587,152 - BBR_RS12620 0.26 -1.7 587,178 - BBR_RS12620 0.28 -1.9 587,178 - BBR_RS12620 0.28 -2.2 587,227 - BBR_RS12620 0.33 -3.7 587,235 + BBR_RS12620 0.34 -1.5 587,248 + BBR_RS12620 0.35 -1.9 587,248 + BBR_RS12620 0.35 -2.0 587,248 + BBR_RS12620 0.35 -1.6 587,254 + BBR_RS12620 0.36 -0.5 587,256 - BBR_RS12620 0.36 -1.0 587,257 - BBR_RS12620 0.36 -2.0 587,318 - BBR_RS12620 0.42 -1.4 587,338 - BBR_RS12620 0.43 -2.2 587,447 + BBR_RS12620 0.54 -1.5 587,470 - BBR_RS12620 0.56 -1.1 587,488 + BBR_RS12620 0.57 -3.3 587,488 + BBR_RS12620 0.57 -2.1 587,530 + BBR_RS12620 0.61 -3.4 587,530 + BBR_RS12620 0.61 -2.9 587,540 + BBR_RS12620 0.62 -1.8 587,550 + BBR_RS12620 0.63 -0.4 587,555 + BBR_RS12620 0.64 -2.0 587,558 + BBR_RS12620 0.64 -2.5 587,563 + BBR_RS12620 0.64 -2.4 587,571 - BBR_RS12620 0.65 -2.3 587,640 - BBR_RS12620 0.72 -2.0 587,648 - BBR_RS12620 0.72 -1.4 587,704 - BBR_RS12620 0.77 -0.4 587,716 - BBR_RS12620 0.79 -2.3 587,758 - BBR_RS12620 0.82 -2.8 587,787 + BBR_RS12620 0.85 -0.2 587,787 + BBR_RS12620 0.85 -1.2 587,828 - BBR_RS12620 0.89 -3.3 587,859 - -3.4 587,859 - -1.4 587,887 - -0.5 587,922 + -2.5 587,922 + -2.7 587,964 - +0.1 587,968 - +0.1 587,988 - -0.2 588,075 - -1.5 588,075 - -0.6 588,084 - +0.4 588,110 - +0.7 588,110 - +1.2 588,111 - -0.7 588,111 - -1.0 588,117 + -3.1 588,117 + -0.3 588,125 - -1.5 588,125 - +0.2 588,137 + -0.4 588,157 - -0.5 588,268 + -1.3 588,308 - -2.6 588,329 - +1.9 588,367 + -0.6 588,370 - -0.3 588,370 - -1.0 588,380 - -0.8 588,387 + -0.1 588,390 - -2.0 588,395 - -0.0 588,395 - -2.7 588,406 + -0.6 588,425 - +0.4 588,556 + BBR_RS12625 0.14 -0.8 588,556 + BBR_RS12625 0.14 -1.8 588,561 + BBR_RS12625 0.14 +0.4 588,564 - BBR_RS12625 0.15 +0.4 588,564 - BBR_RS12625 0.15 +1.2 588,569 - BBR_RS12625 0.15 -0.5 588,571 + BBR_RS12625 0.15 -0.8 588,589 - BBR_RS12625 0.17 -1.3 588,589 - BBR_RS12625 0.17 +2.6 588,601 - BBR_RS12625 0.18 -0.2 588,627 - BBR_RS12625 0.20 -0.2 588,632 - BBR_RS12625 0.21 -0.6 588,634 + BBR_RS12625 0.21 -1.4 588,641 - BBR_RS12625 0.22 -0.6 588,641 - BBR_RS12625 0.22 -1.2 588,665 - BBR_RS12625 0.24 -0.2 588,692 + BBR_RS12625 0.26 -0.3 588,722 + BBR_RS12625 0.29 +0.3 588,730 - BBR_RS12625 0.30 -1.6 588,730 - BBR_RS12625 0.30 -0.5 588,730 - BBR_RS12625 0.30 -0.2 588,730 - BBR_RS12625 0.30 -2.3 588,730 - BBR_RS12625 0.30 +1.7 588,773 + BBR_RS12625 0.34 -0.5 588,779 + BBR_RS12625 0.34 -0.6 588,779 + BBR_RS12625 0.34 +0.6 588,779 + BBR_RS12625 0.34 +4.0 588,787 - BBR_RS12625 0.35 -1.1 588,787 - BBR_RS12625 0.35 +1.6 588,787 - BBR_RS12625 0.35 -0.4 588,787 - BBR_RS12625 0.35 +0.5 588,860 + BBR_RS12625 0.42 -1.8 588,944 - BBR_RS12625 0.49 +1.1
Or see this region's nucleotide sequence