Strain Fitness in Bifidobacterium breve UCC2003 around BBR_RS12450

Experiment: diet=StandardDiet; sample=FecalPellet; mouse1; day4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBBR_RS20695 and BBR_RS12445 are separated by 433 nucleotidesBBR_RS12445 and BBR_RS12450 are separated by 168 nucleotidesBBR_RS12450 and BBR_RS12455 are separated by 27 nucleotides BBR_RS20695: BBR_RS20695 - hypothetical protein, at 541,506 to 541,820 _RS20695 BBR_RS12445: BBR_RS12445 - 50S ribosomal protein L19, at 542,254 to 542,619 _RS12445 BBR_RS12450: BBR_RS12450 - signal peptidase I, at 542,788 to 543,711 _RS12450 BBR_RS12455: BBR_RS12455 - ribonuclease HII, at 543,739 to 544,596 _RS12455 Position (kb) 542 543 544Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 541.847 kb on - strandat 541.864 kb on + strandat 541.888 kb on + strandat 541.889 kb on + strandat 541.930 kb on + strandat 541.932 kb on - strandat 541.941 kb on + strandat 541.941 kb on + strandat 541.948 kb on + strandat 541.968 kb on + strandat 542.011 kb on - strandat 542.717 kb on - strandat 542.753 kb on + strandat 542.760 kb on - strandat 542.760 kb on - strandat 542.771 kb on - strandat 542.779 kb on + strandat 542.789 kb on + strandat 542.796 kb on - strandat 542.796 kb on - strandat 542.798 kb on + strandat 542.821 kb on + strandat 542.821 kb on + strandat 542.848 kb on + strandat 542.850 kb on + strandat 542.850 kb on + strandat 542.856 kb on - strandat 542.875 kb on + strandat 542.875 kb on + strandat 543.000 kb on + strand, within BBR_RS12450at 543.017 kb on + strand, within BBR_RS12450at 543.036 kb on + strand, within BBR_RS12450at 543.102 kb on - strand, within BBR_RS12450at 543.104 kb on + strand, within BBR_RS12450at 543.603 kb on + strand, within BBR_RS12450at 543.667 kb on - strandat 543.669 kb on + strandat 543.669 kb on + strandat 543.669 kb on + strandat 543.669 kb on + strandat 543.680 kb on + strandat 543.752 kb on + strandat 543.754 kb on - strandat 543.793 kb on - strandat 543.834 kb on - strand, within BBR_RS12455at 543.964 kb on + strand, within BBR_RS12455at 543.964 kb on + strand, within BBR_RS12455at 543.964 kb on + strand, within BBR_RS12455at 543.964 kb on + strand, within BBR_RS12455at 543.964 kb on + strand, within BBR_RS12455at 543.982 kb on - strand, within BBR_RS12455at 543.996 kb on + strand, within BBR_RS12455at 543.996 kb on + strand, within BBR_RS12455at 543.996 kb on + strand, within BBR_RS12455at 544.065 kb on + strand, within BBR_RS12455at 544.065 kb on + strand, within BBR_RS12455at 544.073 kb on - strand, within BBR_RS12455at 544.073 kb on - strand, within BBR_RS12455at 544.073 kb on - strand, within BBR_RS12455at 544.073 kb on - strand, within BBR_RS12455at 544.082 kb on - strand, within BBR_RS12455at 544.082 kb on - strand, within BBR_RS12455at 544.082 kb on - strand, within BBR_RS12455at 544.084 kb on + strand, within BBR_RS12455at 544.084 kb on + strand, within BBR_RS12455at 544.092 kb on - strand, within BBR_RS12455at 544.092 kb on - strand, within BBR_RS12455at 544.101 kb on + strand, within BBR_RS12455at 544.101 kb on + strand, within BBR_RS12455at 544.109 kb on - strand, within BBR_RS12455at 544.136 kb on + strand, within BBR_RS12455at 544.138 kb on - strand, within BBR_RS12455at 544.150 kb on - strand, within BBR_RS12455at 544.154 kb on - strand, within BBR_RS12455at 544.164 kb on - strand, within BBR_RS12455at 544.170 kb on + strand, within BBR_RS12455at 544.176 kb on + strand, within BBR_RS12455at 544.178 kb on - strand, within BBR_RS12455at 544.181 kb on + strand, within BBR_RS12455at 544.181 kb on + strand, within BBR_RS12455at 544.187 kb on + strand, within BBR_RS12455at 544.224 kb on - strand, within BBR_RS12455at 544.232 kb on + strand, within BBR_RS12455at 544.232 kb on + strand, within BBR_RS12455at 544.232 kb on + strand, within BBR_RS12455at 544.232 kb on + strand, within BBR_RS12455at 544.232 kb on + strand, within BBR_RS12455at 544.232 kb on + strand, within BBR_RS12455at 544.254 kb on - strand, within BBR_RS12455at 544.256 kb on - strand, within BBR_RS12455at 544.256 kb on - strand, within BBR_RS12455at 544.266 kb on + strand, within BBR_RS12455at 544.272 kb on + strand, within BBR_RS12455at 544.301 kb on + strand, within BBR_RS12455at 544.324 kb on + strand, within BBR_RS12455at 544.326 kb on - strand, within BBR_RS12455at 544.334 kb on + strand, within BBR_RS12455at 544.337 kb on - strand, within BBR_RS12455at 544.380 kb on + strand, within BBR_RS12455at 544.380 kb on + strand, within BBR_RS12455at 544.380 kb on + strand, within BBR_RS12455at 544.381 kb on + strand, within BBR_RS12455at 544.388 kb on - strand, within BBR_RS12455at 544.395 kb on + strand, within BBR_RS12455at 544.398 kb on - strand, within BBR_RS12455at 544.403 kb on - strand, within BBR_RS12455at 544.415 kb on + strand, within BBR_RS12455at 544.425 kb on - strand, within BBR_RS12455at 544.448 kb on + strand, within BBR_RS12455at 544.460 kb on + strand, within BBR_RS12455at 544.460 kb on + strand, within BBR_RS12455at 544.466 kb on - strand, within BBR_RS12455at 544.499 kb on - strand, within BBR_RS12455at 544.503 kb on - strand, within BBR_RS12455at 544.506 kb on + strand, within BBR_RS12455at 544.512 kb on + strandat 544.521 kb on - strandat 544.521 kb on - strandat 544.554 kb on - strandat 544.564 kb on + strandat 544.570 kb on - strandat 544.570 kb on - strandat 544.598 kb on - strandat 544.608 kb on + strandat 544.608 kb on + strandat 544.611 kb on - strandat 544.624 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction diet=StandardDiet; sample=FecalPellet; mouse1; day4
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541,847 - -0.8
541,864 + -2.2
541,888 + -0.4
541,889 + +0.8
541,930 + -0.7
541,932 - -0.5
541,941 + +2.8
541,941 + -0.6
541,948 + -1.0
541,968 + +0.5
542,011 - -0.7
542,717 - -1.4
542,753 + +1.6
542,760 - -1.2
542,760 - -2.5
542,771 - -1.4
542,779 + -1.9
542,789 + -1.9
542,796 - +0.1
542,796 - -0.4
542,798 + -0.6
542,821 + -2.2
542,821 + -3.1
542,848 + -1.8
542,850 + +0.2
542,850 + +1.2
542,856 - -1.2
542,875 + -1.1
542,875 + -3.0
543,000 + BBR_RS12450 0.23 +0.5
543,017 + BBR_RS12450 0.25 -2.5
543,036 + BBR_RS12450 0.27 +0.8
543,102 - BBR_RS12450 0.34 -1.9
543,104 + BBR_RS12450 0.34 -2.3
543,603 + BBR_RS12450 0.88 -2.9
543,667 - +1.4
543,669 + -0.7
543,669 + +0.5
543,669 + -0.3
543,669 + +1.0
543,680 + -0.1
543,752 + +0.0
543,754 - +0.2
543,793 - +0.2
543,834 - BBR_RS12455 0.11 +1.5
543,964 + BBR_RS12455 0.26 +0.0
543,964 + BBR_RS12455 0.26 -1.5
543,964 + BBR_RS12455 0.26 +0.6
543,964 + BBR_RS12455 0.26 +0.9
543,964 + BBR_RS12455 0.26 +2.8
543,982 - BBR_RS12455 0.28 +0.8
543,996 + BBR_RS12455 0.30 +2.1
543,996 + BBR_RS12455 0.30 +1.1
543,996 + BBR_RS12455 0.30 +3.0
544,065 + BBR_RS12455 0.38 +0.9
544,065 + BBR_RS12455 0.38 +1.2
544,073 - BBR_RS12455 0.39 -0.2
544,073 - BBR_RS12455 0.39 -1.3
544,073 - BBR_RS12455 0.39 +0.4
544,073 - BBR_RS12455 0.39 -2.3
544,082 - BBR_RS12455 0.40 -0.6
544,082 - BBR_RS12455 0.40 -1.6
544,082 - BBR_RS12455 0.40 +2.5
544,084 + BBR_RS12455 0.40 +1.4
544,084 + BBR_RS12455 0.40 -0.5
544,092 - BBR_RS12455 0.41 -2.5
544,092 - BBR_RS12455 0.41 +0.5
544,101 + BBR_RS12455 0.42 +2.1
544,101 + BBR_RS12455 0.42 +0.5
544,109 - BBR_RS12455 0.43 +2.0
544,136 + BBR_RS12455 0.46 +0.1
544,138 - BBR_RS12455 0.47 +0.0
544,150 - BBR_RS12455 0.48 +2.4
544,154 - BBR_RS12455 0.48 -2.6
544,164 - BBR_RS12455 0.50 +1.0
544,170 + BBR_RS12455 0.50 -0.1
544,176 + BBR_RS12455 0.51 +0.1
544,178 - BBR_RS12455 0.51 -0.0
544,181 + BBR_RS12455 0.52 +1.4
544,181 + BBR_RS12455 0.52 +0.3
544,187 + BBR_RS12455 0.52 -0.2
544,224 - BBR_RS12455 0.57 -1.8
544,232 + BBR_RS12455 0.57 +2.4
544,232 + BBR_RS12455 0.57 +1.5
544,232 + BBR_RS12455 0.57 +0.3
544,232 + BBR_RS12455 0.57 +2.5
544,232 + BBR_RS12455 0.57 +0.5
544,232 + BBR_RS12455 0.57 +0.4
544,254 - BBR_RS12455 0.60 +0.8
544,256 - BBR_RS12455 0.60 +0.1
544,256 - BBR_RS12455 0.60 -1.0
544,266 + BBR_RS12455 0.61 -0.3
544,272 + BBR_RS12455 0.62 -0.3
544,301 + BBR_RS12455 0.66 -0.2
544,324 + BBR_RS12455 0.68 +1.0
544,326 - BBR_RS12455 0.68 -1.2
544,334 + BBR_RS12455 0.69 +2.7
544,337 - BBR_RS12455 0.70 +1.2
544,380 + BBR_RS12455 0.75 -2.0
544,380 + BBR_RS12455 0.75 -0.4
544,380 + BBR_RS12455 0.75 +0.3
544,381 + BBR_RS12455 0.75 +0.1
544,388 - BBR_RS12455 0.76 +1.4
544,395 + BBR_RS12455 0.76 -1.1
544,398 - BBR_RS12455 0.77 -1.7
544,403 - BBR_RS12455 0.77 -0.6
544,415 + BBR_RS12455 0.79 -0.2
544,425 - BBR_RS12455 0.80 -0.6
544,448 + BBR_RS12455 0.83 +0.3
544,460 + BBR_RS12455 0.84 -2.3
544,460 + BBR_RS12455 0.84 +0.2
544,466 - BBR_RS12455 0.85 -0.5
544,499 - BBR_RS12455 0.89 +2.6
544,503 - BBR_RS12455 0.89 -0.1
544,506 + BBR_RS12455 0.89 -0.3
544,512 + -0.3
544,521 - +0.8
544,521 - +1.3
544,554 - +1.0
544,564 + +0.6
544,570 - +0.7
544,570 - -0.3
544,598 - +1.5
544,608 + -0.4
544,608 + +0.5
544,611 - +0.1
544,624 + +0.3

Or see this region's nucleotide sequence