Strain Fitness in Bifidobacterium breve UCC2003 around BBR_RS12370

Experiment: diet=StandardDiet; sample=FecalPellet; mouse1; day4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBBR_RS12360 and BBR_RS12365 are separated by 89 nucleotidesBBR_RS12365 and BBR_RS12370 are separated by 115 nucleotidesBBR_RS12370 and BBR_RS12375 are separated by 5 nucleotidesBBR_RS12375 and BBR_RS12380 are separated by 104 nucleotides BBR_RS12360: BBR_RS12360 - 50S ribosomal protein L32, at 525,074 to 525,268 _RS12360 BBR_RS12365: BBR_RS12365 - DUF177 domain-containing protein, at 525,358 to 525,978 _RS12365 BBR_RS12370: BBR_RS12370 - cell division protein, at 526,094 to 526,879 _RS12370 BBR_RS12375: BBR_RS12375 - pantetheine-phosphate adenylyltransferase, at 526,885 to 527,385 _RS12375 BBR_RS12380: BBR_RS12380 - DUF3039 domain-containing protein, at 527,490 to 527,771 _RS12380 Position (kb) 526 527Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 525.379 kb on + strandat 525.382 kb on - strandat 525.388 kb on - strandat 525.394 kb on - strandat 525.456 kb on + strand, within BBR_RS12365at 525.456 kb on + strand, within BBR_RS12365at 525.458 kb on - strand, within BBR_RS12365at 525.461 kb on + strand, within BBR_RS12365at 525.464 kb on - strand, within BBR_RS12365at 525.475 kb on + strand, within BBR_RS12365at 525.475 kb on + strand, within BBR_RS12365at 525.476 kb on - strand, within BBR_RS12365at 525.478 kb on - strand, within BBR_RS12365at 525.480 kb on + strand, within BBR_RS12365at 525.488 kb on - strand, within BBR_RS12365at 525.488 kb on - strand, within BBR_RS12365at 525.502 kb on - strand, within BBR_RS12365at 525.528 kb on - strand, within BBR_RS12365at 525.529 kb on - strand, within BBR_RS12365at 525.533 kb on - strand, within BBR_RS12365at 525.602 kb on - strand, within BBR_RS12365at 525.612 kb on - strand, within BBR_RS12365at 525.662 kb on + strand, within BBR_RS12365at 525.667 kb on + strand, within BBR_RS12365at 525.675 kb on - strand, within BBR_RS12365at 525.675 kb on - strand, within BBR_RS12365at 525.676 kb on - strand, within BBR_RS12365at 525.716 kb on + strand, within BBR_RS12365at 525.721 kb on + strand, within BBR_RS12365at 525.735 kb on + strand, within BBR_RS12365at 525.743 kb on - strand, within BBR_RS12365at 525.844 kb on - strand, within BBR_RS12365at 525.850 kb on - strand, within BBR_RS12365at 525.854 kb on - strand, within BBR_RS12365at 525.862 kb on - strand, within BBR_RS12365at 525.890 kb on - strand, within BBR_RS12365at 525.896 kb on + strand, within BBR_RS12365at 525.905 kb on + strand, within BBR_RS12365at 525.939 kb on - strandat 526.027 kb on - strandat 526.034 kb on + strandat 526.065 kb on + strandat 526.070 kb on + strandat 526.073 kb on - strandat 526.073 kb on - strandat 526.078 kb on - strandat 526.078 kb on - strandat 526.082 kb on + strandat 526.082 kb on + strandat 526.090 kb on - strandat 526.090 kb on - strandat 526.090 kb on - strandat 526.110 kb on - strandat 526.131 kb on + strandat 526.733 kb on - strand, within BBR_RS12370at 526.891 kb on - strandat 526.896 kb on - strandat 526.898 kb on + strandat 526.916 kb on + strandat 527.083 kb on - strand, within BBR_RS12375at 527.125 kb on - strand, within BBR_RS12375at 527.212 kb on - strand, within BBR_RS12375at 527.388 kb on + strandat 527.388 kb on - strandat 527.420 kb on - strandat 527.420 kb on - strandat 527.420 kb on - strandat 527.422 kb on + strandat 527.422 kb on + strandat 527.422 kb on + strandat 527.430 kb on - strandat 527.506 kb on + strandat 527.514 kb on + strandat 527.540 kb on + strand, within BBR_RS12380at 527.558 kb on - strand, within BBR_RS12380at 527.561 kb on + strand, within BBR_RS12380at 527.574 kb on - strand, within BBR_RS12380at 527.629 kb on - strand, within BBR_RS12380at 527.636 kb on + strand, within BBR_RS12380at 527.666 kb on + strand, within BBR_RS12380at 527.671 kb on + strand, within BBR_RS12380at 527.685 kb on + strand, within BBR_RS12380at 527.698 kb on - strand, within BBR_RS12380at 527.704 kb on + strand, within BBR_RS12380at 527.704 kb on + strand, within BBR_RS12380at 527.704 kb on + strand, within BBR_RS12380at 527.712 kb on + strand, within BBR_RS12380at 527.712 kb on - strand, within BBR_RS12380at 527.734 kb on - strand, within BBR_RS12380at 527.835 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction diet=StandardDiet; sample=FecalPellet; mouse1; day4
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525,379 + -1.6
525,382 - -0.1
525,388 - +0.8
525,394 - +0.5
525,456 + BBR_RS12365 0.16 -1.2
525,456 + BBR_RS12365 0.16 -1.3
525,458 - BBR_RS12365 0.16 -0.7
525,461 + BBR_RS12365 0.17 -0.0
525,464 - BBR_RS12365 0.17 -0.1
525,475 + BBR_RS12365 0.19 +1.0
525,475 + BBR_RS12365 0.19 +1.6
525,476 - BBR_RS12365 0.19 +0.3
525,478 - BBR_RS12365 0.19 +0.6
525,480 + BBR_RS12365 0.20 -0.4
525,488 - BBR_RS12365 0.21 +1.4
525,488 - BBR_RS12365 0.21 +0.2
525,502 - BBR_RS12365 0.23 -0.7
525,528 - BBR_RS12365 0.27 -1.4
525,529 - BBR_RS12365 0.28 -0.2
525,533 - BBR_RS12365 0.28 -1.0
525,602 - BBR_RS12365 0.39 -1.1
525,612 - BBR_RS12365 0.41 -0.1
525,662 + BBR_RS12365 0.49 +1.5
525,667 + BBR_RS12365 0.50 +0.8
525,675 - BBR_RS12365 0.51 -0.2
525,675 - BBR_RS12365 0.51 -0.7
525,676 - BBR_RS12365 0.51 -0.9
525,716 + BBR_RS12365 0.58 +0.2
525,721 + BBR_RS12365 0.58 -0.3
525,735 + BBR_RS12365 0.61 -0.8
525,743 - BBR_RS12365 0.62 -1.3
525,844 - BBR_RS12365 0.78 +0.9
525,850 - BBR_RS12365 0.79 -1.2
525,854 - BBR_RS12365 0.80 -1.4
525,862 - BBR_RS12365 0.81 -0.8
525,890 - BBR_RS12365 0.86 -2.0
525,896 + BBR_RS12365 0.87 -0.6
525,905 + BBR_RS12365 0.88 +0.0
525,939 - -1.4
526,027 - +2.9
526,034 + -0.1
526,065 + -0.2
526,070 + +1.1
526,073 - -0.9
526,073 - -1.7
526,078 - -0.5
526,078 - -2.6
526,082 + -0.9
526,082 + +2.6
526,090 - +2.0
526,090 - +0.3
526,090 - +1.8
526,110 - +0.9
526,131 + -0.8
526,733 - BBR_RS12370 0.81 -2.1
526,891 - -3.8
526,896 - +1.8
526,898 + +0.8
526,916 + -0.8
527,083 - BBR_RS12375 0.40 -0.2
527,125 - BBR_RS12375 0.48 -1.4
527,212 - BBR_RS12375 0.65 +4.0
527,388 + +1.0
527,388 - -1.4
527,420 - -1.7
527,420 - +0.1
527,420 - +1.0
527,422 + +0.9
527,422 + -1.5
527,422 + -1.1
527,430 - -2.9
527,506 + +0.8
527,514 + -0.0
527,540 + BBR_RS12380 0.18 -0.3
527,558 - BBR_RS12380 0.24 -0.5
527,561 + BBR_RS12380 0.25 +0.7
527,574 - BBR_RS12380 0.30 -0.0
527,629 - BBR_RS12380 0.49 -0.7
527,636 + BBR_RS12380 0.52 +1.6
527,666 + BBR_RS12380 0.62 -1.0
527,671 + BBR_RS12380 0.64 +1.0
527,685 + BBR_RS12380 0.69 +0.1
527,698 - BBR_RS12380 0.74 -1.8
527,704 + BBR_RS12380 0.76 +0.3
527,704 + BBR_RS12380 0.76 +0.2
527,704 + BBR_RS12380 0.76 -0.6
527,712 + BBR_RS12380 0.79 -1.6
527,712 - BBR_RS12380 0.79 +2.8
527,734 - BBR_RS12380 0.87 +1.2
527,835 - +0.9

Or see this region's nucleotide sequence