Strain Fitness in Bifidobacterium breve UCC2003 around BBR_RS11720

Experiment: diet=StandardDiet; sample=FecalPellet; mouse1; day4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBBR_RS11715 and BBR_RS11720 are separated by 6 nucleotidesBBR_RS11720 and BBR_RS11725 are separated by 170 nucleotides BBR_RS11715: BBR_RS11715 - N-acetyltransferase, at 383,492 to 384,538 _RS11715 BBR_RS11720: BBR_RS11720 - DUF2469 domain-containing protein, at 384,545 to 384,859 _RS11720 BBR_RS11725: BBR_RS11725 - FAD-dependent oxidoreductase, at 385,030 to 386,643 _RS11725 Position (kb) 384 385Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 383.551 kb on + strandat 383.604 kb on + strand, within BBR_RS11715at 383.610 kb on + strand, within BBR_RS11715at 383.636 kb on - strand, within BBR_RS11715at 383.638 kb on + strand, within BBR_RS11715at 383.638 kb on + strand, within BBR_RS11715at 383.686 kb on - strand, within BBR_RS11715at 383.699 kb on + strand, within BBR_RS11715at 383.707 kb on + strand, within BBR_RS11715at 383.707 kb on + strand, within BBR_RS11715at 383.707 kb on + strand, within BBR_RS11715at 383.707 kb on + strand, within BBR_RS11715at 383.715 kb on - strand, within BBR_RS11715at 383.715 kb on - strand, within BBR_RS11715at 383.715 kb on - strand, within BBR_RS11715at 383.728 kb on + strand, within BBR_RS11715at 383.741 kb on + strand, within BBR_RS11715at 383.762 kb on + strand, within BBR_RS11715at 383.790 kb on + strand, within BBR_RS11715at 383.794 kb on + strand, within BBR_RS11715at 383.794 kb on + strand, within BBR_RS11715at 383.794 kb on + strand, within BBR_RS11715at 383.802 kb on - strand, within BBR_RS11715at 383.833 kb on + strand, within BBR_RS11715at 383.835 kb on - strand, within BBR_RS11715at 383.839 kb on + strand, within BBR_RS11715at 383.839 kb on + strand, within BBR_RS11715at 383.863 kb on + strand, within BBR_RS11715at 383.905 kb on - strand, within BBR_RS11715at 383.918 kb on + strand, within BBR_RS11715at 383.918 kb on + strand, within BBR_RS11715at 383.932 kb on + strand, within BBR_RS11715at 383.932 kb on + strand, within BBR_RS11715at 383.938 kb on + strand, within BBR_RS11715at 383.938 kb on + strand, within BBR_RS11715at 383.967 kb on + strand, within BBR_RS11715at 383.999 kb on + strand, within BBR_RS11715at 384.000 kb on + strand, within BBR_RS11715at 384.000 kb on + strand, within BBR_RS11715at 384.002 kb on - strand, within BBR_RS11715at 384.014 kb on + strand, within BBR_RS11715at 384.015 kb on + strand, within BBR_RS11715at 384.020 kb on + strand, within BBR_RS11715at 384.020 kb on + strand, within BBR_RS11715at 384.028 kb on - strand, within BBR_RS11715at 384.028 kb on - strand, within BBR_RS11715at 384.030 kb on + strand, within BBR_RS11715at 384.030 kb on + strand, within BBR_RS11715at 384.030 kb on + strand, within BBR_RS11715at 384.030 kb on + strand, within BBR_RS11715at 384.030 kb on + strand, within BBR_RS11715at 384.038 kb on - strand, within BBR_RS11715at 384.108 kb on - strand, within BBR_RS11715at 384.108 kb on - strand, within BBR_RS11715at 384.119 kb on + strand, within BBR_RS11715at 384.119 kb on + strand, within BBR_RS11715at 384.127 kb on - strand, within BBR_RS11715at 384.259 kb on + strand, within BBR_RS11715at 384.259 kb on + strand, within BBR_RS11715at 384.282 kb on - strand, within BBR_RS11715at 384.282 kb on - strand, within BBR_RS11715at 384.294 kb on + strand, within BBR_RS11715at 384.294 kb on + strand, within BBR_RS11715at 384.312 kb on - strand, within BBR_RS11715at 384.314 kb on + strand, within BBR_RS11715at 384.317 kb on + strand, within BBR_RS11715at 384.322 kb on + strand, within BBR_RS11715at 384.322 kb on + strand, within BBR_RS11715at 384.322 kb on + strand, within BBR_RS11715at 384.322 kb on + strand, within BBR_RS11715at 384.322 kb on + strand, within BBR_RS11715at 384.322 kb on + strand, within BBR_RS11715at 384.322 kb on + strand, within BBR_RS11715at 384.322 kb on + strand, within BBR_RS11715at 384.322 kb on + strand, within BBR_RS11715at 384.330 kb on - strand, within BBR_RS11715at 384.330 kb on - strand, within BBR_RS11715at 384.338 kb on - strand, within BBR_RS11715at 384.342 kb on + strand, within BBR_RS11715at 384.342 kb on + strand, within BBR_RS11715at 384.361 kb on + strand, within BBR_RS11715at 384.372 kb on + strand, within BBR_RS11715at 384.385 kb on + strand, within BBR_RS11715at 384.388 kb on - strand, within BBR_RS11715at 384.400 kb on + strand, within BBR_RS11715at 384.414 kb on + strand, within BBR_RS11715at 384.422 kb on - strand, within BBR_RS11715at 384.429 kb on + strand, within BBR_RS11715at 384.429 kb on + strand, within BBR_RS11715at 384.431 kb on + strand, within BBR_RS11715at 384.437 kb on - strandat 384.437 kb on - strandat 384.439 kb on - strandat 384.439 kb on - strandat 384.474 kb on - strandat 384.492 kb on + strandat 384.493 kb on - strandat 384.495 kb on + strandat 384.495 kb on + strandat 384.497 kb on + strandat 384.500 kb on - strandat 384.500 kb on - strandat 384.502 kb on + strandat 384.597 kb on + strand, within BBR_RS11720at 384.614 kb on + strand, within BBR_RS11720at 384.645 kb on - strand, within BBR_RS11720at 384.662 kb on - strand, within BBR_RS11720at 384.698 kb on + strand, within BBR_RS11720at 384.698 kb on + strand, within BBR_RS11720at 384.698 kb on + strand, within BBR_RS11720at 384.698 kb on + strand, within BBR_RS11720at 384.698 kb on + strand, within BBR_RS11720at 384.727 kb on - strand, within BBR_RS11720at 384.739 kb on + strand, within BBR_RS11720at 384.739 kb on + strand, within BBR_RS11720at 384.746 kb on + strand, within BBR_RS11720at 384.792 kb on + strand, within BBR_RS11720at 384.802 kb on + strand, within BBR_RS11720at 384.854 kb on + strandat 384.854 kb on + strandat 384.854 kb on + strandat 384.861 kb on + strandat 384.873 kb on - strandat 384.875 kb on + strandat 384.875 kb on + strandat 384.956 kb on + strandat 384.956 kb on + strandat 384.964 kb on - strandat 384.966 kb on + strandat 384.966 kb on + strandat 384.966 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction diet=StandardDiet; sample=FecalPellet; mouse1; day4
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383,551 + -2.0
383,604 + BBR_RS11715 0.11 -1.8
383,610 + BBR_RS11715 0.11 -3.4
383,636 - BBR_RS11715 0.14 -0.6
383,638 + BBR_RS11715 0.14 -2.0
383,638 + BBR_RS11715 0.14 -2.9
383,686 - BBR_RS11715 0.19 -4.0
383,699 + BBR_RS11715 0.20 -2.2
383,707 + BBR_RS11715 0.21 -1.5
383,707 + BBR_RS11715 0.21 -3.0
383,707 + BBR_RS11715 0.21 -1.4
383,707 + BBR_RS11715 0.21 -0.8
383,715 - BBR_RS11715 0.21 -0.7
383,715 - BBR_RS11715 0.21 -2.5
383,715 - BBR_RS11715 0.21 -2.5
383,728 + BBR_RS11715 0.23 -1.7
383,741 + BBR_RS11715 0.24 -1.6
383,762 + BBR_RS11715 0.26 -3.4
383,790 + BBR_RS11715 0.28 -2.5
383,794 + BBR_RS11715 0.29 -0.9
383,794 + BBR_RS11715 0.29 -3.7
383,794 + BBR_RS11715 0.29 -4.3
383,802 - BBR_RS11715 0.30 -2.2
383,833 + BBR_RS11715 0.33 -2.7
383,835 - BBR_RS11715 0.33 -1.8
383,839 + BBR_RS11715 0.33 -4.1
383,839 + BBR_RS11715 0.33 -3.1
383,863 + BBR_RS11715 0.35 -1.8
383,905 - BBR_RS11715 0.39 -1.5
383,918 + BBR_RS11715 0.41 -1.6
383,918 + BBR_RS11715 0.41 -1.7
383,932 + BBR_RS11715 0.42 -1.9
383,932 + BBR_RS11715 0.42 -0.9
383,938 + BBR_RS11715 0.43 -3.0
383,938 + BBR_RS11715 0.43 -2.0
383,967 + BBR_RS11715 0.45 -3.7
383,999 + BBR_RS11715 0.48 -2.0
384,000 + BBR_RS11715 0.49 -3.1
384,000 + BBR_RS11715 0.49 -3.0
384,002 - BBR_RS11715 0.49 -2.7
384,014 + BBR_RS11715 0.50 -1.0
384,015 + BBR_RS11715 0.50 +0.2
384,020 + BBR_RS11715 0.50 -3.1
384,020 + BBR_RS11715 0.50 -1.5
384,028 - BBR_RS11715 0.51 -2.8
384,028 - BBR_RS11715 0.51 -1.9
384,030 + BBR_RS11715 0.51 -2.0
384,030 + BBR_RS11715 0.51 -2.0
384,030 + BBR_RS11715 0.51 -3.2
384,030 + BBR_RS11715 0.51 -1.1
384,030 + BBR_RS11715 0.51 -1.8
384,038 - BBR_RS11715 0.52 -3.1
384,108 - BBR_RS11715 0.59 -0.7
384,108 - BBR_RS11715 0.59 -1.1
384,119 + BBR_RS11715 0.60 -1.4
384,119 + BBR_RS11715 0.60 -0.1
384,127 - BBR_RS11715 0.61 -2.9
384,259 + BBR_RS11715 0.73 -2.2
384,259 + BBR_RS11715 0.73 -2.3
384,282 - BBR_RS11715 0.75 -3.1
384,282 - BBR_RS11715 0.75 -1.3
384,294 + BBR_RS11715 0.77 -1.7
384,294 + BBR_RS11715 0.77 -0.7
384,312 - BBR_RS11715 0.78 -3.5
384,314 + BBR_RS11715 0.79 -1.6
384,317 + BBR_RS11715 0.79 -0.9
384,322 + BBR_RS11715 0.79 -2.7
384,322 + BBR_RS11715 0.79 -1.5
384,322 + BBR_RS11715 0.79 -1.5
384,322 + BBR_RS11715 0.79 -1.4
384,322 + BBR_RS11715 0.79 -1.5
384,322 + BBR_RS11715 0.79 -0.4
384,322 + BBR_RS11715 0.79 -2.1
384,322 + BBR_RS11715 0.79 -3.0
384,322 + BBR_RS11715 0.79 -1.6
384,330 - BBR_RS11715 0.80 -1.7
384,330 - BBR_RS11715 0.80 -0.7
384,338 - BBR_RS11715 0.81 -2.4
384,342 + BBR_RS11715 0.81 -3.0
384,342 + BBR_RS11715 0.81 -1.0
384,361 + BBR_RS11715 0.83 -1.7
384,372 + BBR_RS11715 0.84 -2.4
384,385 + BBR_RS11715 0.85 -1.6
384,388 - BBR_RS11715 0.86 -2.3
384,400 + BBR_RS11715 0.87 -2.6
384,414 + BBR_RS11715 0.88 -1.9
384,422 - BBR_RS11715 0.89 -1.4
384,429 + BBR_RS11715 0.89 -1.3
384,429 + BBR_RS11715 0.89 -1.1
384,431 + BBR_RS11715 0.90 -1.8
384,437 - -2.6
384,437 - -0.3
384,439 - -1.6
384,439 - -2.6
384,474 - -1.2
384,492 + -1.2
384,493 - -2.4
384,495 + +0.2
384,495 + -1.8
384,497 + -2.7
384,500 - -1.3
384,500 - -1.1
384,502 + -1.3
384,597 + BBR_RS11720 0.17 +1.5
384,614 + BBR_RS11720 0.22 -2.4
384,645 - BBR_RS11720 0.32 +2.3
384,662 - BBR_RS11720 0.37 -0.1
384,698 + BBR_RS11720 0.49 -2.5
384,698 + BBR_RS11720 0.49 -2.8
384,698 + BBR_RS11720 0.49 -2.4
384,698 + BBR_RS11720 0.49 -1.4
384,698 + BBR_RS11720 0.49 -0.5
384,727 - BBR_RS11720 0.58 -0.2
384,739 + BBR_RS11720 0.62 -2.1
384,739 + BBR_RS11720 0.62 -1.3
384,746 + BBR_RS11720 0.64 -2.0
384,792 + BBR_RS11720 0.78 -1.2
384,802 + BBR_RS11720 0.82 +0.5
384,854 + +0.0
384,854 + -0.2
384,854 + +1.2
384,861 + -0.7
384,873 - +0.3
384,875 + +1.2
384,875 + +0.5
384,956 + +0.8
384,956 + -0.3
384,964 - -0.7
384,966 + +0.4
384,966 + -1.6
384,966 + -1.3

Or see this region's nucleotide sequence