Strain Fitness in Bifidobacterium breve UCC2003 around BBR_RS10905

Experiment: diet=StandardDiet; sample=FecalPellet; mouse1; day4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBBR_RS10900 and BBR_RS10905 overlap by 1 nucleotidesBBR_RS10905 and BBR_RS10910 are separated by 178 nucleotides BBR_RS10900: BBR_RS10900 - molecular chaperone DnaK, at 188,855 to 190,735 _RS10900 BBR_RS10905: BBR_RS10905 - nucleotide exchange factor GrpE, at 190,735 to 191,418 _RS10905 BBR_RS10910: BBR_RS10910 - molecular chaperone DnaJ, at 191,597 to 192,610 _RS10910 Position (kb) 190 191 192Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4 5at 190.516 kb on + strand, within BBR_RS10900at 190.516 kb on + strand, within BBR_RS10900at 190.516 kb on + strand, within BBR_RS10900at 190.522 kb on + strand, within BBR_RS10900at 190.530 kb on + strand, within BBR_RS10900at 190.540 kb on + strand, within BBR_RS10900at 190.540 kb on + strand, within BBR_RS10900at 190.549 kb on + strandat 190.555 kb on + strandat 190.555 kb on + strandat 190.569 kb on + strandat 190.599 kb on + strandat 190.599 kb on + strandat 190.611 kb on + strandat 190.611 kb on + strandat 190.815 kb on + strand, within BBR_RS10905at 190.815 kb on + strand, within BBR_RS10905at 190.845 kb on + strand, within BBR_RS10905at 190.845 kb on + strand, within BBR_RS10905at 190.845 kb on + strand, within BBR_RS10905at 190.860 kb on + strand, within BBR_RS10905at 190.860 kb on + strand, within BBR_RS10905at 190.998 kb on + strand, within BBR_RS10905at 191.022 kb on + strand, within BBR_RS10905at 191.022 kb on + strand, within BBR_RS10905at 191.022 kb on + strand, within BBR_RS10905at 191.022 kb on + strand, within BBR_RS10905at 191.108 kb on + strand, within BBR_RS10905at 191.305 kb on + strand, within BBR_RS10905at 191.390 kb on + strandat 191.395 kb on + strandat 191.422 kb on + strandat 191.425 kb on - strandat 191.425 kb on - strandat 191.433 kb on + strandat 191.472 kb on - strandat 191.478 kb on + strandat 191.478 kb on + strandat 191.484 kb on + strandat 191.488 kb on + strandat 191.488 kb on + strandat 191.488 kb on + strandat 191.488 kb on + strandat 191.488 kb on + strandat 191.496 kb on - strandat 191.496 kb on - strandat 191.496 kb on - strandat 191.499 kb on + strandat 191.499 kb on + strandat 191.507 kb on - strandat 191.519 kb on - strandat 191.527 kb on + strandat 191.535 kb on - strandat 191.543 kb on - strandat 191.545 kb on + strandat 191.545 kb on + strandat 191.545 kb on + strandat 191.545 kb on + strandat 191.545 kb on + strandat 191.553 kb on - strandat 191.553 kb on - strandat 191.567 kb on + strandat 191.587 kb on + strandat 191.603 kb on + strandat 191.608 kb on - strandat 191.619 kb on + strandat 191.626 kb on + strandat 191.626 kb on + strandat 191.636 kb on + strandat 191.647 kb on + strandat 191.647 kb on + strandat 191.647 kb on + strandat 191.655 kb on - strandat 191.655 kb on - strandat 191.664 kb on - strandat 191.701 kb on + strand, within BBR_RS10910at 191.704 kb on + strand, within BBR_RS10910at 191.704 kb on + strand, within BBR_RS10910at 191.704 kb on + strand, within BBR_RS10910at 191.704 kb on + strand, within BBR_RS10910at 191.704 kb on + strand, within BBR_RS10910at 191.704 kb on + strand, within BBR_RS10910at 191.709 kb on + strand, within BBR_RS10910at 191.709 kb on + strand, within BBR_RS10910at 191.709 kb on + strand, within BBR_RS10910at 191.710 kb on + strand, within BBR_RS10910at 191.712 kb on - strand, within BBR_RS10910at 191.719 kb on + strand, within BBR_RS10910at 191.746 kb on + strand, within BBR_RS10910at 191.757 kb on + strand, within BBR_RS10910at 191.765 kb on + strand, within BBR_RS10910at 191.777 kb on - strand, within BBR_RS10910at 191.782 kb on - strand, within BBR_RS10910at 191.784 kb on + strand, within BBR_RS10910at 191.825 kb on + strand, within BBR_RS10910at 191.829 kb on - strand, within BBR_RS10910at 191.861 kb on + strand, within BBR_RS10910at 191.877 kb on + strand, within BBR_RS10910at 191.886 kb on + strand, within BBR_RS10910at 191.896 kb on + strand, within BBR_RS10910at 191.925 kb on - strand, within BBR_RS10910at 191.970 kb on + strand, within BBR_RS10910at 191.970 kb on + strand, within BBR_RS10910at 191.971 kb on + strand, within BBR_RS10910at 191.998 kb on + strand, within BBR_RS10910at 192.014 kb on + strand, within BBR_RS10910at 192.016 kb on + strand, within BBR_RS10910at 192.043 kb on + strand, within BBR_RS10910at 192.044 kb on + strand, within BBR_RS10910at 192.049 kb on + strand, within BBR_RS10910at 192.049 kb on + strand, within BBR_RS10910at 192.049 kb on + strand, within BBR_RS10910at 192.049 kb on + strand, within BBR_RS10910at 192.057 kb on - strand, within BBR_RS10910at 192.069 kb on + strand, within BBR_RS10910at 192.080 kb on + strand, within BBR_RS10910at 192.104 kb on + strand, within BBR_RS10910at 192.106 kb on + strand, within BBR_RS10910at 192.123 kb on + strand, within BBR_RS10910at 192.133 kb on + strand, within BBR_RS10910at 192.142 kb on + strand, within BBR_RS10910at 192.142 kb on + strand, within BBR_RS10910at 192.142 kb on + strand, within BBR_RS10910at 192.148 kb on + strand, within BBR_RS10910at 192.160 kb on + strand, within BBR_RS10910at 192.184 kb on + strand, within BBR_RS10910at 192.184 kb on + strand, within BBR_RS10910at 192.192 kb on - strand, within BBR_RS10910at 192.192 kb on - strand, within BBR_RS10910at 192.192 kb on - strand, within BBR_RS10910at 192.192 kb on - strand, within BBR_RS10910at 192.226 kb on + strand, within BBR_RS10910at 192.226 kb on + strand, within BBR_RS10910at 192.244 kb on + strand, within BBR_RS10910at 192.252 kb on - strand, within BBR_RS10910at 192.330 kb on + strand, within BBR_RS10910at 192.341 kb on + strand, within BBR_RS10910at 192.341 kb on + strand, within BBR_RS10910at 192.341 kb on + strand, within BBR_RS10910at 192.341 kb on + strand, within BBR_RS10910at 192.355 kb on + strand, within BBR_RS10910at 192.360 kb on + strand, within BBR_RS10910at 192.360 kb on + strand, within BBR_RS10910at 192.360 kb on + strand, within BBR_RS10910at 192.360 kb on + strand, within BBR_RS10910at 192.364 kb on + strand, within BBR_RS10910at 192.365 kb on + strand, within BBR_RS10910at 192.368 kb on - strand, within BBR_RS10910at 192.368 kb on - strand, within BBR_RS10910at 192.368 kb on - strand, within BBR_RS10910at 192.388 kb on + strand, within BBR_RS10910at 192.388 kb on + strand, within BBR_RS10910at 192.388 kb on + strand, within BBR_RS10910at 192.388 kb on + strand, within BBR_RS10910at 192.388 kb on + strand, within BBR_RS10910at 192.388 kb on + strand, within BBR_RS10910at 192.388 kb on + strand, within BBR_RS10910at 192.400 kb on + strand, within BBR_RS10910

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Per-strain Table

Position Strand Gene LocusTag Fraction diet=StandardDiet; sample=FecalPellet; mouse1; day4
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190,516 + BBR_RS10900 0.88 +0.8
190,516 + BBR_RS10900 0.88 +0.8
190,516 + BBR_RS10900 0.88 -0.6
190,522 + BBR_RS10900 0.89 +0.3
190,530 + BBR_RS10900 0.89 +0.1
190,540 + BBR_RS10900 0.90 +2.3
190,540 + BBR_RS10900 0.90 +0.3
190,549 + +1.5
190,555 + +1.3
190,555 + -0.5
190,569 + -1.4
190,599 + +1.5
190,599 + -2.3
190,611 + +0.5
190,611 + -0.8
190,815 + BBR_RS10905 0.12 -2.0
190,815 + BBR_RS10905 0.12 -3.4
190,845 + BBR_RS10905 0.16 -2.0
190,845 + BBR_RS10905 0.16 -1.2
190,845 + BBR_RS10905 0.16 -2.2
190,860 + BBR_RS10905 0.18 -1.7
190,860 + BBR_RS10905 0.18 -2.5
190,998 + BBR_RS10905 0.38 -3.0
191,022 + BBR_RS10905 0.42 -2.7
191,022 + BBR_RS10905 0.42 -2.9
191,022 + BBR_RS10905 0.42 -2.6
191,022 + BBR_RS10905 0.42 -0.5
191,108 + BBR_RS10905 0.55 +0.3
191,305 + BBR_RS10905 0.83 +0.3
191,390 + +0.5
191,395 + +2.8
191,422 + +1.1
191,425 - -0.2
191,425 - -0.4
191,433 + -1.1
191,472 - +0.6
191,478 + +1.1
191,478 + +0.4
191,484 + -1.2
191,488 + +0.7
191,488 + -0.9
191,488 + +1.7
191,488 + -0.0
191,488 + -1.0
191,496 - +0.7
191,496 - +0.0
191,496 - -0.9
191,499 + +0.4
191,499 + -1.8
191,507 - +1.2
191,519 - +0.4
191,527 + +0.9
191,535 - +0.2
191,543 - +0.3
191,545 + -1.6
191,545 + +1.6
191,545 + -2.6
191,545 + +1.1
191,545 + -0.5
191,553 - -1.4
191,553 - -0.8
191,567 + +0.6
191,587 + -0.8
191,603 + +1.6
191,608 - +0.6
191,619 + +1.8
191,626 + +0.9
191,626 + +0.8
191,636 + +2.6
191,647 + +0.8
191,647 + +0.3
191,647 + +2.1
191,655 - +3.3
191,655 - +1.3
191,664 - +2.2
191,701 + BBR_RS10910 0.10 -1.5
191,704 + BBR_RS10910 0.11 +0.6
191,704 + BBR_RS10910 0.11 +1.9
191,704 + BBR_RS10910 0.11 -0.8
191,704 + BBR_RS10910 0.11 +0.1
191,704 + BBR_RS10910 0.11 +1.3
191,704 + BBR_RS10910 0.11 +1.1
191,709 + BBR_RS10910 0.11 +1.8
191,709 + BBR_RS10910 0.11 +1.0
191,709 + BBR_RS10910 0.11 +0.7
191,710 + BBR_RS10910 0.11 +0.8
191,712 - BBR_RS10910 0.11 +0.4
191,719 + BBR_RS10910 0.12 +3.5
191,746 + BBR_RS10910 0.15 +1.8
191,757 + BBR_RS10910 0.16 +1.6
191,765 + BBR_RS10910 0.17 +1.0
191,777 - BBR_RS10910 0.18 +3.3
191,782 - BBR_RS10910 0.18 +2.8
191,784 + BBR_RS10910 0.18 +2.3
191,825 + BBR_RS10910 0.22 +0.6
191,829 - BBR_RS10910 0.23 +0.0
191,861 + BBR_RS10910 0.26 +1.3
191,877 + BBR_RS10910 0.28 +1.5
191,886 + BBR_RS10910 0.29 +1.8
191,896 + BBR_RS10910 0.29 +0.4
191,925 - BBR_RS10910 0.32 +4.8
191,970 + BBR_RS10910 0.37 +1.1
191,970 + BBR_RS10910 0.37 +1.3
191,971 + BBR_RS10910 0.37 +0.9
191,998 + BBR_RS10910 0.40 +1.6
192,014 + BBR_RS10910 0.41 +1.0
192,016 + BBR_RS10910 0.41 -0.1
192,043 + BBR_RS10910 0.44 +1.5
192,044 + BBR_RS10910 0.44 -0.9
192,049 + BBR_RS10910 0.45 -2.1
192,049 + BBR_RS10910 0.45 -1.4
192,049 + BBR_RS10910 0.45 +0.4
192,049 + BBR_RS10910 0.45 -0.7
192,057 - BBR_RS10910 0.45 +1.0
192,069 + BBR_RS10910 0.47 -0.5
192,080 + BBR_RS10910 0.48 +1.4
192,104 + BBR_RS10910 0.50 +0.6
192,106 + BBR_RS10910 0.50 -0.2
192,123 + BBR_RS10910 0.52 +1.1
192,133 + BBR_RS10910 0.53 +1.5
192,142 + BBR_RS10910 0.54 +1.2
192,142 + BBR_RS10910 0.54 -2.4
192,142 + BBR_RS10910 0.54 +0.4
192,148 + BBR_RS10910 0.54 +0.8
192,160 + BBR_RS10910 0.56 +2.8
192,184 + BBR_RS10910 0.58 -0.3
192,184 + BBR_RS10910 0.58 +1.2
192,192 - BBR_RS10910 0.59 +2.3
192,192 - BBR_RS10910 0.59 +1.0
192,192 - BBR_RS10910 0.59 +0.8
192,192 - BBR_RS10910 0.59 +0.5
192,226 + BBR_RS10910 0.62 +0.2
192,226 + BBR_RS10910 0.62 +0.5
192,244 + BBR_RS10910 0.64 +0.3
192,252 - BBR_RS10910 0.65 +2.3
192,330 + BBR_RS10910 0.72 +0.7
192,341 + BBR_RS10910 0.73 -0.7
192,341 + BBR_RS10910 0.73 -0.7
192,341 + BBR_RS10910 0.73 +0.9
192,341 + BBR_RS10910 0.73 +1.9
192,355 + BBR_RS10910 0.75 +1.4
192,360 + BBR_RS10910 0.75 +0.2
192,360 + BBR_RS10910 0.75 -1.4
192,360 + BBR_RS10910 0.75 +0.3
192,360 + BBR_RS10910 0.75 -0.1
192,364 + BBR_RS10910 0.76 +0.6
192,365 + BBR_RS10910 0.76 -0.7
192,368 - BBR_RS10910 0.76 +1.2
192,368 - BBR_RS10910 0.76 -0.5
192,368 - BBR_RS10910 0.76 +0.8
192,388 + BBR_RS10910 0.78 +1.0
192,388 + BBR_RS10910 0.78 +1.0
192,388 + BBR_RS10910 0.78 -1.8
192,388 + BBR_RS10910 0.78 +0.2
192,388 + BBR_RS10910 0.78 -0.0
192,388 + BBR_RS10910 0.78 +1.3
192,388 + BBR_RS10910 0.78 +0.2
192,400 + BBR_RS10910 0.79 +0.5

Or see this region's nucleotide sequence