Strain Fitness in Bifidobacterium breve UCC2003 around BBR_RS10780

Experiment: diet=StandardDiet; sample=FecalPellet; mouse1; day4

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	diet=StandardDiet; sample=FecalPellet; mouse1; day4
143,523	+		BBR_RS10775	0.47	-0.5
143,523	+		BBR_RS10775	0.47	+2.7
143,550	-		BBR_RS10775	0.50	+2.5
143,592	-		BBR_RS10775	0.54	-0.3
143,595	+		BBR_RS10775	0.54	-0.1
143,599	-		BBR_RS10775	0.54	-2.5
143,600	+		BBR_RS10775	0.54	+0.8
143,626	+		BBR_RS10775	0.57	+0.5
143,649	-		BBR_RS10775	0.59	-0.2
143,670	+		BBR_RS10775	0.61	+0.1
143,684	+		BBR_RS10775	0.62	+0.1
143,703	-		BBR_RS10775	0.64	-0.6
143,719	-		BBR_RS10775	0.65	+1.9
143,740	+		BBR_RS10775	0.67	+0.1
143,755	+		BBR_RS10775	0.69	+0.8
143,758	-		BBR_RS10775	0.69	-1.9
143,761	+		BBR_RS10775	0.69	+0.8
143,761	+		BBR_RS10775	0.69	-0.2
143,761	+		BBR_RS10775	0.69	-1.0
143,761	-		BBR_RS10775	0.69	-1.9
143,783	+		BBR_RS10775	0.71	-1.0
143,791	-		BBR_RS10775	0.72	+0.7
143,793	+		BBR_RS10775	0.72	-2.5
143,793	+		BBR_RS10775	0.72	-1.2
143,828	+		BBR_RS10775	0.75	-0.6
143,828	+		BBR_RS10775	0.75	-0.1
143,828	+		BBR_RS10775	0.75	+0.9
143,828	+		BBR_RS10775	0.75	-1.7
143,828	+		BBR_RS10775	0.75	-0.6
143,836	-		BBR_RS10775	0.76	-0.9
143,853	-		BBR_RS10775	0.78	+0.1
143,860	+		BBR_RS10775	0.78	-1.1
143,873	+		BBR_RS10775	0.80	+0.7
143,873	+		BBR_RS10775	0.80	-0.2
143,887	+		BBR_RS10775	0.81	+1.1
143,887	+		BBR_RS10775	0.81	+2.6
143,897	+		BBR_RS10775	0.82	-0.4
143,905	-		BBR_RS10775	0.83	+0.9
143,907	+		BBR_RS10775	0.83	-0.8
143,907	+		BBR_RS10775	0.83	+0.5
143,907	+		BBR_RS10775	0.83	+2.6
143,907	+		BBR_RS10775	0.83	-0.7
143,907	+		BBR_RS10775	0.83	+2.3
143,907	+		BBR_RS10775	0.83	+1.1
143,907	+		BBR_RS10775	0.83	+1.6
143,907	+		BBR_RS10775	0.83	-1.0
143,915	-		BBR_RS10775	0.83	+2.2
143,917	+		BBR_RS10775	0.84	-0.8
143,917	+		BBR_RS10775	0.84	+1.7
143,927	+		BBR_RS10775	0.85	+0.0
143,953	+		BBR_RS10775	0.87	+1.5
143,953	+		BBR_RS10775	0.87	+0.4
143,953	+		BBR_RS10775	0.87	+0.7
143,953	+		BBR_RS10775	0.87	-2.2
143,953	+		BBR_RS10775	0.87	-1.5
143,953	+		BBR_RS10775	0.87	-0.2
143,953	+		BBR_RS10775	0.87	+0.4
143,953	+		BBR_RS10775	0.87	+0.3
143,953	+		BBR_RS10775	0.87	-0.8
143,961	-		BBR_RS10775	0.88	-0.0
143,961	-		BBR_RS10775	0.88	+1.0
143,961	-		BBR_RS10775	0.88	-1.0
143,961	-		BBR_RS10775	0.88	-1.2
143,961	-		BBR_RS10775	0.88	-0.7
143,961	-		BBR_RS10775	0.88	+1.0
143,961	-		BBR_RS10775	0.88	+1.7
143,961	-		BBR_RS10775	0.88	+0.9
143,962	+		BBR_RS10775	0.88	+0.1
143,998	-				+0.9
143,998	-				-1.2
144,003	+				-2.7
144,010	+				+1.6
144,012	-				-0.7
144,027	+				+0.4
144,027	+				+0.9
144,027	+				+1.8
144,027	+				+2.0
144,029	-				-0.0
144,029	-				+0.2
144,035	-				+0.0
144,035	-				+2.7
144,059	+				+0.7
144,059	+				-1.1
144,067	-				-0.1
144,070	+				-0.3
144,089	+				+1.3
144,089	+				-2.6
144,089	+				+2.6
144,089	+				-0.9
144,089	+				-1.3
144,089	+				-0.3
144,091	+				+0.5
144,097	-				+2.7
144,097	-				+0.5
144,097	-				+0.4
144,097	-				-0.6
144,097	-				-0.8
144,097	-				+3.3
144,097	-				+1.5
144,097	-				+0.7
144,097	-				-2.4
144,122	+				+1.2
144,130	-				+1.9
144,130	-				+0.4
144,130	-				+2.1
144,148	+				-0.1
144,148	+				-1.1
144,148	+				+1.0
144,148	+				+0.3
144,165	-				-0.1
144,166	+				+2.0
144,166	+				-0.3
144,179	-				-1.0
144,187	-				-2.2
144,197	+				-1.1
144,197	+				+0.7
144,202	-				-1.1
144,205	-				-0.4
144,205	-				-2.4
144,263	+				+1.7
144,263	+				+0.1
144,266	-				-0.8
144,276	+				+0.3
144,289	-				-0.6
144,298	+				+0.7
144,304	-				+0.0
144,306	-				-1.1
144,306	-				+1.4
144,321	+				+1.0
144,329	+				+0.6
144,329	+				+2.1
144,329	+				-1.1
144,329	+				-1.4
144,329	+				-0.3
144,329	+				-2.1
144,334	+				+1.5
144,337	-				-0.8
144,337	-				+0.3
144,343	+				-1.2
144,353	+				+2.2
144,353	+				+0.3
144,353	+				-1.8
144,353	+				-0.0
144,353	+				-2.0
144,353	+				+1.1
144,353	+				-0.6
144,353	+				+1.0
144,353	+				+1.4
144,355	+				+0.9
144,355	+				+0.1
144,358	-				+0.8
144,358	-				-0.5
144,361	+				+2.7
144,361	-				-0.5
144,361	-				+0.0
144,361	-				-0.7
144,361	-				+1.3
144,361	-				-2.2
144,374	-				-2.9
144,431	+				+0.2
144,469	+				-1.9
144,486	+				+0.6
144,511	+				-2.5
144,511	+				+0.0
144,577	-				-2.8
144,592	-				-3.7
144,601	+				-2.4
144,617	+				-2.9
144,617	+				-1.8
144,619	+				-3.1
144,619	+				-0.1
144,625	-				-1.0
144,643	+				-1.2
144,645	+				-2.6
144,694	+		BBR_RS10780	0.11	-3.1
144,702	-		BBR_RS10780	0.12	-0.3
144,702	-		BBR_RS10780	0.12	-0.9
144,702	-		BBR_RS10780	0.12	-1.2
144,702	-		BBR_RS10780	0.12	-4.2
144,750	-		BBR_RS10780	0.15	-1.4
144,757	+		BBR_RS10780	0.15	-1.9
144,787	-		BBR_RS10780	0.17	-2.2
144,788	+		BBR_RS10780	0.17	-2.2
144,808	-		BBR_RS10780	0.19	-1.4
144,813	-		BBR_RS10780	0.19	-0.8
144,835	+		BBR_RS10780	0.21	-1.6
144,841	-		BBR_RS10780	0.21	-0.7
144,843	-		BBR_RS10780	0.21	-0.6
144,853	+		BBR_RS10780	0.22	-1.2
144,867	+		BBR_RS10780	0.23	-0.8
144,896	-		BBR_RS10780	0.25	-2.9
144,904	+		BBR_RS10780	0.25	-1.7
144,929	+		BBR_RS10780	0.27	-2.9
144,942	-		BBR_RS10780	0.28	-1.8
144,944	+		BBR_RS10780	0.28	-1.9
144,946	+		BBR_RS10780	0.28	-0.8
144,946	+		BBR_RS10780	0.28	-3.4
144,946	+		BBR_RS10780	0.28	-2.0
144,946	+		BBR_RS10780	0.28	-3.0
144,954	-		BBR_RS10780	0.28	-3.6
144,959	+		BBR_RS10780	0.29	-1.1
144,977	-		BBR_RS10780	0.30	-3.2
144,978	+		BBR_RS10780	0.30	-1.7
144,987	-		BBR_RS10780	0.31	-2.2
144,990	+		BBR_RS10780	0.31	-2.5
144,990	+		BBR_RS10780	0.31	-0.3
144,993	-		BBR_RS10780	0.31	-2.2
145,006	+		BBR_RS10780	0.32	-1.5
145,006	+		BBR_RS10780	0.32	-1.0
145,011	+		BBR_RS10780	0.32	-1.6
145,027	+		BBR_RS10780	0.33	-1.6
145,028	+		BBR_RS10780	0.33	-3.3
145,028	+		BBR_RS10780	0.33	-4.4
145,030	-		BBR_RS10780	0.33	+1.0
145,045	+		BBR_RS10780	0.34	-1.3
145,067	+		BBR_RS10780	0.36	-4.6
145,102	+		BBR_RS10780	0.38	-0.8
145,110	+		BBR_RS10780	0.39	-3.5
145,110	+		BBR_RS10780	0.39	-2.8
145,118	-		BBR_RS10780	0.39	-1.7
145,144	+		BBR_RS10780	0.41	-1.5
145,152	+		BBR_RS10780	0.41	-2.4
145,152	+		BBR_RS10780	0.41	-2.6
145,152	+		BBR_RS10780	0.41	-2.7
145,152	+		BBR_RS10780	0.41	-0.9
145,152	+		BBR_RS10780	0.41	-2.1
145,152	+		BBR_RS10780	0.41	-3.3
145,152	+		BBR_RS10780	0.41	-3.1
145,152	+		BBR_RS10780	0.41	-1.9
145,152	-		BBR_RS10780	0.41	-2.5
145,160	-		BBR_RS10780	0.42	-0.9
145,160	-		BBR_RS10780	0.42	-1.6
145,160	-		BBR_RS10780	0.42	-2.4
145,164	+		BBR_RS10780	0.42	-1.7
145,167	-		BBR_RS10780	0.42	-0.6
145,199	+		BBR_RS10780	0.44	-2.7
145,241	+		BBR_RS10780	0.47	-0.7
145,251	+		BBR_RS10780	0.48	-2.7
145,267	+		BBR_RS10780	0.49	-0.9
145,275	+		BBR_RS10780	0.49	+0.1
145,275	+		BBR_RS10780	0.49	+0.4
145,276	-		BBR_RS10780	0.49	-2.9
145,285	+		BBR_RS10780	0.50	-3.5
145,295	-		BBR_RS10780	0.51	-2.0
145,321	+		BBR_RS10780	0.52	-0.7
145,321	+		BBR_RS10780	0.52	-3.4
145,321	+		BBR_RS10780	0.52	-1.3
145,321	+		BBR_RS10780	0.52	-1.4
145,321	+		BBR_RS10780	0.52	-1.6
145,329	-		BBR_RS10780	0.53	-0.7
145,337	-		BBR_RS10780	0.53	-2.2
145,337	-		BBR_RS10780	0.53	-2.5
145,339	-		BBR_RS10780	0.54	-1.3
145,352	+		BBR_RS10780	0.54	-2.5
145,373	-		BBR_RS10780	0.56	-2.1
145,392	+		BBR_RS10780	0.57	-3.1
145,413	+		BBR_RS10780	0.58	-0.4
145,434	+		BBR_RS10780	0.60	-1.7
145,435	+		BBR_RS10780	0.60	-3.5
145,435	+		BBR_RS10780	0.60	-2.8
145,474	+		BBR_RS10780	0.62	-3.6
145,474	+		BBR_RS10780	0.62	-2.8
145,482	-		BBR_RS10780	0.63	-2.0
145,482	-		BBR_RS10780	0.63	-0.6
145,487	-		BBR_RS10780	0.63	-2.1
145,487	-		BBR_RS10780	0.63	-1.1
145,487	-		BBR_RS10780	0.63	-2.8
145,489	+		BBR_RS10780	0.63	-2.9
145,497	-		BBR_RS10780	0.64	-0.3
145,497	-		BBR_RS10780	0.64	+0.8
145,509	-		BBR_RS10780	0.65	-0.6
145,539	+		BBR_RS10780	0.67	-0.2
145,549	+		BBR_RS10780	0.67	-2.6
145,553	+		BBR_RS10780	0.68	-2.4
145,563	-		BBR_RS10780	0.68	-1.8
145,572	+		BBR_RS10780	0.69	-0.2
145,572	+		BBR_RS10780	0.69	-2.0
145,572	+		BBR_RS10780	0.69	-2.4
145,575	-		BBR_RS10780	0.69	-1.0
145,592	+		BBR_RS10780	0.70	-2.8
145,592	+		BBR_RS10780	0.70	-2.3
145,592	+		BBR_RS10780	0.70	-2.2
145,600	+		BBR_RS10780	0.71	-2.6
145,600	-		BBR_RS10780	0.71	-1.8
145,602	+		BBR_RS10780	0.71	-1.4
145,605	-		BBR_RS10780	0.71	-2.7
145,619	+		BBR_RS10780	0.72	+0.3
145,619	+		BBR_RS10780	0.72	-2.5
145,619	+		BBR_RS10780	0.72	-1.7
145,627	-		BBR_RS10780	0.72	-1.0
145,633	+		BBR_RS10780	0.73	-3.1
145,648	+		BBR_RS10780	0.74	-2.9
145,648	+		BBR_RS10780	0.74	-2.5
145,648	+		BBR_RS10780	0.74	-0.2
145,648	+		BBR_RS10780	0.74	-1.4
145,648	+		BBR_RS10780	0.74	-2.3
145,654	+		BBR_RS10780	0.74	-0.4
145,656	-		BBR_RS10780	0.74	-1.9
145,656	-		BBR_RS10780	0.74	-1.9
145,656	-		BBR_RS10780	0.74	-0.2
145,658	-		BBR_RS10780	0.74	-0.3
145,673	+		BBR_RS10780	0.75	-1.1
145,683	+		BBR_RS10780	0.76	-0.5
145,684	+		BBR_RS10780	0.76	-2.1
145,691	-		BBR_RS10780	0.77	-2.3
145,696	+		BBR_RS10780	0.77	-2.8
145,710	-		BBR_RS10780	0.78	-0.4
145,728	-		BBR_RS10780	0.79	-1.2
145,773	+		BBR_RS10780	0.82	-2.1
145,783	-		BBR_RS10780	0.83	-1.7
145,784	+		BBR_RS10780	0.83	-0.7
145,792	-		BBR_RS10780	0.83	-2.7
145,792	-		BBR_RS10780	0.83	-2.7
145,799	+		BBR_RS10780	0.84	-2.2
145,832	+		BBR_RS10780	0.86	-1.0
145,887	+		BBR_RS10780	0.89	-1.4
145,894	+		BBR_RS10780	0.90	+0.9
145,900	+				-4.6
145,900	+				-1.4
145,900	+				-0.8
145,900	+				-2.8
145,900	+				-0.4
145,900	+				-1.7
145,900	+				-2.3
145,900	+				-1.1
145,905	+				-1.3
145,908	-				-2.4
145,908	-				-3.1
145,910	+				-1.3
145,927	+				-0.1
145,946	+				-2.0
145,946	+				-0.4
145,946	+				-0.6
145,946	+				-1.2
145,950	+				+0.1
145,954	-				-1.2
145,954	-				-2.6
145,972	+				-2.6
145,972	+				-0.5
145,972	+				-1.5
145,976	-				-1.9
146,048	+				+0.3
146,055	+				-0.2
146,056	-				+5.6
146,056	-				-0.5
146,063	+				-0.5
146,071	-				-0.3
146,114	-				+0.4
146,138	+				+0.1
146,138	+				+0.9
146,138	+				-0.1
146,146	-				+1.0
146,146	-				+1.3
146,171	-				+2.7
146,181	-				-0.7
146,186	-				-0.7
146,186	-				-0.6
146,206	+				+1.9
146,206	+				+2.4
146,209	-				-0.9
146,209	-				-1.4
146,214	+				-0.5
146,214	+				-2.8
146,261	-				-1.9
146,279	+				+0.1
146,297	+				+1.5
146,299	+				-2.1
146,299	+				+0.7
146,299	+				+1.5
146,302	-				-1.4
146,302	-				-1.2
146,313	+				-0.6
146,321	-				-2.5
146,329	-				-0.2
146,338	-				+2.8
146,338	-				-0.5
146,347	+				+2.0
146,352	-				-1.3
146,367	+				+1.6
146,369	+				+0.0
146,387	-				-0.5
146,389	+				-1.4
146,389	+				+0.2
146,395	+				-0.7
146,397	-				+0.3
146,397	-				-0.3
146,403	-				-0.4
146,403	-				-2.6
146,403	-				-0.2
146,444	+		BBR_RS10785	0.12	-0.5
146,444	+		BBR_RS10785	0.12	+1.2
146,456	+		BBR_RS10785	0.12	+0.2
146,462	-		BBR_RS10785	0.13	+0.9
146,465	-		BBR_RS10785	0.13	-0.6
146,479	+		BBR_RS10785	0.14	+0.1
146,489	-		BBR_RS10785	0.14	-0.0
146,561	+		BBR_RS10785	0.19	+0.0
146,579	+		BBR_RS10785	0.20	-0.2
146,599	+		BBR_RS10785	0.21	-0.5
146,609	+		BBR_RS10785	0.22	+0.1
146,617	+		BBR_RS10785	0.22	+0.9
146,619	-		BBR_RS10785	0.22	+0.2
146,619	-		BBR_RS10785	0.22	+0.8
146,629	+		BBR_RS10785	0.23	-2.3
146,637	-		BBR_RS10785	0.24	+0.1
146,637	-		BBR_RS10785	0.24	+0.2
146,637	-		BBR_RS10785	0.24	+0.8
146,637	-		BBR_RS10785	0.24	+1.0
146,672	+		BBR_RS10785	0.26	-1.1
146,685	+		BBR_RS10785	0.26	+0.6
146,690	+		BBR_RS10785	0.27	-0.3
146,737	+		BBR_RS10785	0.30	-0.4
146,737	+		BBR_RS10785	0.30	+0.2
146,745	-		BBR_RS10785	0.30	+0.2
146,745	-		BBR_RS10785	0.30	-0.9
146,746	-		BBR_RS10785	0.30	+0.5
146,748	+		BBR_RS10785	0.30	+0.1
146,756	-		BBR_RS10785	0.31	+0.3
146,771	+		BBR_RS10785	0.32	-0.1
146,771	-		BBR_RS10785	0.32	+0.7
146,779	-		BBR_RS10785	0.32	-0.7
146,789	+		BBR_RS10785	0.33	-2.9
146,789	+		BBR_RS10785	0.33	-1.7
146,789	+		BBR_RS10785	0.33	+1.3
146,789	+		BBR_RS10785	0.33	+0.7
146,789	+		BBR_RS10785	0.33	+0.5
146,797	-		BBR_RS10785	0.33	-0.0
146,804	+		BBR_RS10785	0.34	+2.0
146,814	-		BBR_RS10785	0.34	-0.9
146,814	-		BBR_RS10785	0.34	-0.8
146,819	+		BBR_RS10785	0.35	+1.4
146,819	+		BBR_RS10785	0.35	-1.6
146,819	+		BBR_RS10785	0.35	-0.3
146,825	+		BBR_RS10785	0.35	-0.9
146,835	+		BBR_RS10785	0.36	-1.6
146,852	+		BBR_RS10785	0.37	+0.6
146,852	+		BBR_RS10785	0.37	+2.2
146,852	+		BBR_RS10785	0.37	+3.6
146,887	+		BBR_RS10785	0.39	-1.6
146,887	+		BBR_RS10785	0.39	-1.3
146,899	+		BBR_RS10785	0.40	+0.2
146,906	+		BBR_RS10785	0.40	+0.6
146,907	-		BBR_RS10785	0.40	-0.3
146,907	-		BBR_RS10785	0.40	-0.3
146,908	-		BBR_RS10785	0.40	+0.0
146,909	-		BBR_RS10785	0.40	+1.2
146,910	+		BBR_RS10785	0.40	-1.5
146,910	+		BBR_RS10785	0.40	+0.7
146,910	+		BBR_RS10785	0.40	+1.6
146,910	+		BBR_RS10785	0.40	-2.2
146,925	-		BBR_RS10785	0.41	+0.2
146,936	+		BBR_RS10785	0.42	+0.0
146,936	+		BBR_RS10785	0.42	-2.3
146,942	+		BBR_RS10785	0.42	+3.1
146,942	+		BBR_RS10785	0.42	+0.7
146,944	-		BBR_RS10785	0.42	-1.5
146,950	-		BBR_RS10785	0.43	-0.6
146,952	+		BBR_RS10785	0.43	-2.4
146,969	+		BBR_RS10785	0.44	+0.1
146,969	+		BBR_RS10785	0.44	-0.1
146,969	+		BBR_RS10785	0.44	+2.9
146,969	-		BBR_RS10785	0.44	-1.7
146,977	-		BBR_RS10785	0.44	+0.3
146,977	-		BBR_RS10785	0.44	+0.8
147,036	+		BBR_RS10785	0.48	-1.2
147,036	+		BBR_RS10785	0.48	-0.3