Experiment: diet=StandardDiet; sample=FecalPellet; mouse1; day4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BBR_RS10260 and BBR_RS10265 are separated by 24 nucleotides BBR_RS10265 and BBR_RS10270 overlap by 4 nucleotides BBR_RS10270 and BBR_RS10275 are separated by 182 nucleotides
BBR_RS10260: BBR_RS10260 - DNA polymerase III subunit beta, at 2,043 to 3,167
_RS10260
BBR_RS10265: BBR_RS10265 - DNA replication and repair protein RecF, at 3,192 to 4,349
_RS10265
BBR_RS10270: BBR_RS10270 - DUF721 domain-containing protein, at 4,346 to 4,816
_RS10270
BBR_RS10275: BBR_RS10275 - DNA topoisomerase (ATP-hydrolyzing) subunit B, at 4,999 to 7,089
_RS10275
Position (kb) 3
4
5 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2
3
4 at 3.176 kb on + strand at 3.176 kb on + strand at 3.178 kb on + strand at 3.178 kb on + strand at 3.233 kb on + strand at 3.235 kb on + strand at 3.239 kb on + strand at 3.241 kb on - strand at 3.294 kb on + strand at 3.308 kb on + strand, within BBR_RS10265 at 3.308 kb on + strand, within BBR_RS10265 at 3.308 kb on + strand, within BBR_RS10265 at 3.308 kb on + strand, within BBR_RS10265 at 3.326 kb on + strand, within BBR_RS10265 at 3.326 kb on + strand, within BBR_RS10265 at 3.337 kb on + strand, within BBR_RS10265 at 3.352 kb on + strand, within BBR_RS10265 at 3.421 kb on + strand, within BBR_RS10265 at 3.434 kb on - strand, within BBR_RS10265 at 3.439 kb on + strand, within BBR_RS10265 at 3.482 kb on + strand, within BBR_RS10265 at 3.503 kb on + strand, within BBR_RS10265 at 3.503 kb on + strand, within BBR_RS10265 at 3.542 kb on + strand, within BBR_RS10265 at 3.549 kb on + strand, within BBR_RS10265 at 3.557 kb on + strand, within BBR_RS10265 at 3.566 kb on + strand, within BBR_RS10265 at 3.579 kb on + strand, within BBR_RS10265 at 3.597 kb on + strand, within BBR_RS10265 at 3.608 kb on + strand, within BBR_RS10265 at 3.616 kb on - strand, within BBR_RS10265 at 3.620 kb on + strand, within BBR_RS10265 at 3.625 kb on + strand, within BBR_RS10265 at 3.628 kb on - strand, within BBR_RS10265 at 3.664 kb on + strand, within BBR_RS10265 at 3.684 kb on + strand, within BBR_RS10265 at 3.684 kb on + strand, within BBR_RS10265 at 3.693 kb on - strand, within BBR_RS10265 at 3.707 kb on + strand, within BBR_RS10265 at 3.707 kb on + strand, within BBR_RS10265 at 3.717 kb on - strand, within BBR_RS10265 at 3.725 kb on - strand, within BBR_RS10265 at 3.735 kb on + strand, within BBR_RS10265 at 3.766 kb on - strand, within BBR_RS10265 at 3.767 kb on + strand, within BBR_RS10265 at 3.775 kb on - strand, within BBR_RS10265 at 3.786 kb on + strand, within BBR_RS10265 at 3.786 kb on + strand, within BBR_RS10265 at 3.786 kb on + strand, within BBR_RS10265 at 3.788 kb on - strand, within BBR_RS10265 at 3.793 kb on + strand, within BBR_RS10265 at 3.794 kb on - strand, within BBR_RS10265 at 3.794 kb on - strand, within BBR_RS10265 at 3.824 kb on + strand, within BBR_RS10265 at 3.850 kb on - strand, within BBR_RS10265 at 3.852 kb on + strand, within BBR_RS10265 at 3.852 kb on + strand, within BBR_RS10265 at 3.852 kb on + strand, within BBR_RS10265 at 3.852 kb on + strand, within BBR_RS10265 at 3.857 kb on + strand, within BBR_RS10265 at 3.866 kb on + strand, within BBR_RS10265 at 3.866 kb on + strand, within BBR_RS10265 at 3.870 kb on + strand, within BBR_RS10265 at 3.879 kb on + strand, within BBR_RS10265 at 3.886 kb on + strand, within BBR_RS10265 at 3.887 kb on - strand, within BBR_RS10265 at 3.887 kb on - strand, within BBR_RS10265 at 3.917 kb on - strand, within BBR_RS10265 at 3.917 kb on - strand, within BBR_RS10265 at 3.917 kb on - strand, within BBR_RS10265 at 3.938 kb on - strand, within BBR_RS10265 at 3.938 kb on - strand, within BBR_RS10265 at 3.959 kb on + strand, within BBR_RS10265 at 3.959 kb on + strand, within BBR_RS10265 at 3.964 kb on + strand, within BBR_RS10265 at 3.967 kb on - strand, within BBR_RS10265 at 3.973 kb on - strand, within BBR_RS10265 at 3.977 kb on + strand, within BBR_RS10265 at 4.070 kb on + strand, within BBR_RS10265 at 4.070 kb on + strand, within BBR_RS10265 at 4.172 kb on + strand, within BBR_RS10265 at 4.221 kb on + strand, within BBR_RS10265 at 4.224 kb on - strand, within BBR_RS10265 at 4.229 kb on + strand, within BBR_RS10265 at 4.229 kb on - strand, within BBR_RS10265 at 4.264 kb on + strand at 4.264 kb on + strand at 4.264 kb on + strand at 4.264 kb on + strand at 4.272 kb on - strand at 4.309 kb on + strand at 4.309 kb on + strand at 4.319 kb on + strand at 4.319 kb on + strand at 4.319 kb on + strand at 4.319 kb on + strand at 4.319 kb on + strand at 4.319 kb on + strand at 4.319 kb on + strand at 4.319 kb on + strand at 4.319 kb on + strand at 4.319 kb on + strand at 4.319 kb on + strand at 4.319 kb on + strand at 4.319 kb on + strand at 4.319 kb on + strand at 4.319 kb on + strand at 4.319 kb on + strand at 4.319 kb on + strand at 4.319 kb on + strand at 4.319 kb on + strand at 4.319 kb on + strand at 4.319 kb on + strand at 4.319 kb on + strand at 4.319 kb on + strand at 4.319 kb on + strand at 4.319 kb on + strand at 4.319 kb on + strand at 4.319 kb on + strand at 4.319 kb on + strand at 4.319 kb on + strand at 4.321 kb on + strand at 4.327 kb on - strand at 4.327 kb on - strand at 4.327 kb on - strand at 4.327 kb on - strand at 4.327 kb on - strand at 4.327 kb on - strand at 4.327 kb on - strand at 4.327 kb on - strand at 4.327 kb on - strand at 4.327 kb on - strand at 4.327 kb on - strand at 4.331 kb on + strand at 4.331 kb on + strand at 4.341 kb on - strand at 4.345 kb on + strand at 4.351 kb on - strand at 4.351 kb on - strand at 4.359 kb on - strand at 4.768 kb on + strand, within BBR_RS10270 at 4.817 kb on + strand at 4.817 kb on + strand at 4.819 kb on + strand at 4.819 kb on + strand at 4.819 kb on + strand at 4.819 kb on + strand at 4.819 kb on + strand at 4.827 kb on - strand at 4.827 kb on - strand at 4.827 kb on - strand at 4.869 kb on - strand at 4.968 kb on + strand at 5.028 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction diet=StandardDiet; sample=FecalPellet; mouse1; day4 remove 3,176 + -1.9 3,176 + -4.9 3,178 + -1.5 3,178 + -2.3 3,233 + -1.0 3,235 + -2.2 3,239 + -1.7 3,241 - +1.0 3,294 + -0.4 3,308 + BBR_RS10265 0.10 -0.7 3,308 + BBR_RS10265 0.10 -2.7 3,308 + BBR_RS10265 0.10 -1.9 3,308 + BBR_RS10265 0.10 -0.7 3,326 + BBR_RS10265 0.12 -1.4 3,326 + BBR_RS10265 0.12 -1.9 3,337 + BBR_RS10265 0.13 -1.2 3,352 + BBR_RS10265 0.14 +0.0 3,421 + BBR_RS10265 0.20 -2.4 3,434 - BBR_RS10265 0.21 -2.2 3,439 + BBR_RS10265 0.21 -0.7 3,482 + BBR_RS10265 0.25 -2.8 3,503 + BBR_RS10265 0.27 -2.0 3,503 + BBR_RS10265 0.27 -0.4 3,542 + BBR_RS10265 0.30 +0.1 3,549 + BBR_RS10265 0.31 -2.0 3,557 + BBR_RS10265 0.32 -0.2 3,566 + BBR_RS10265 0.32 -1.6 3,579 + BBR_RS10265 0.33 -1.7 3,597 + BBR_RS10265 0.35 -2.4 3,608 + BBR_RS10265 0.36 -1.9 3,616 - BBR_RS10265 0.37 -1.5 3,620 + BBR_RS10265 0.37 -2.9 3,625 + BBR_RS10265 0.37 -1.6 3,628 - BBR_RS10265 0.38 -1.7 3,664 + BBR_RS10265 0.41 -2.5 3,684 + BBR_RS10265 0.42 +0.4 3,684 + BBR_RS10265 0.42 +0.7 3,693 - BBR_RS10265 0.43 -0.4 3,707 + BBR_RS10265 0.44 +0.0 3,707 + BBR_RS10265 0.44 -1.4 3,717 - BBR_RS10265 0.45 -0.3 3,725 - BBR_RS10265 0.46 -0.2 3,735 + BBR_RS10265 0.47 -0.6 3,766 - BBR_RS10265 0.50 +0.6 3,767 + BBR_RS10265 0.50 -0.1 3,775 - BBR_RS10265 0.50 -0.7 3,786 + BBR_RS10265 0.51 -2.2 3,786 + BBR_RS10265 0.51 -1.7 3,786 + BBR_RS10265 0.51 +0.1 3,788 - BBR_RS10265 0.51 +0.2 3,793 + BBR_RS10265 0.52 -1.4 3,794 - BBR_RS10265 0.52 -0.6 3,794 - BBR_RS10265 0.52 -0.9 3,824 + BBR_RS10265 0.55 -0.8 3,850 - BBR_RS10265 0.57 -0.6 3,852 + BBR_RS10265 0.57 -1.0 3,852 + BBR_RS10265 0.57 -1.8 3,852 + BBR_RS10265 0.57 -2.6 3,852 + BBR_RS10265 0.57 -1.8 3,857 + BBR_RS10265 0.57 -1.2 3,866 + BBR_RS10265 0.58 -1.6 3,866 + BBR_RS10265 0.58 -0.5 3,870 + BBR_RS10265 0.59 -3.6 3,879 + BBR_RS10265 0.59 +1.0 3,886 + BBR_RS10265 0.60 +0.5 3,887 - BBR_RS10265 0.60 -2.1 3,887 - BBR_RS10265 0.60 -0.1 3,917 - BBR_RS10265 0.63 -2.3 3,917 - BBR_RS10265 0.63 -1.1 3,917 - BBR_RS10265 0.63 -0.6 3,938 - BBR_RS10265 0.64 -1.2 3,938 - BBR_RS10265 0.64 -0.8 3,959 + BBR_RS10265 0.66 -1.0 3,959 + BBR_RS10265 0.66 -1.9 3,964 + BBR_RS10265 0.67 -2.0 3,967 - BBR_RS10265 0.67 -2.0 3,973 - BBR_RS10265 0.67 +0.0 3,977 + BBR_RS10265 0.68 -1.1 4,070 + BBR_RS10265 0.76 -3.0 4,070 + BBR_RS10265 0.76 -2.6 4,172 + BBR_RS10265 0.85 -1.8 4,221 + BBR_RS10265 0.89 -1.9 4,224 - BBR_RS10265 0.89 -1.4 4,229 + BBR_RS10265 0.90 -1.1 4,229 - BBR_RS10265 0.90 -1.7 4,264 + -1.5 4,264 + -2.5 4,264 + -0.5 4,264 + -4.8 4,272 - -0.7 4,309 + -2.8 4,309 + -2.4 4,319 + +0.2 4,319 + +0.1 4,319 + -1.1 4,319 + -1.9 4,319 + -1.9 4,319 + +1.4 4,319 + -2.9 4,319 + -0.4 4,319 + -1.4 4,319 + -2.2 4,319 + -2.3 4,319 + -2.6 4,319 + -1.5 4,319 + -1.8 4,319 + -0.7 4,319 + -0.2 4,319 + -1.2 4,319 + -1.9 4,319 + -1.8 4,319 + -1.7 4,319 + -1.3 4,319 + +0.0 4,319 + -1.7 4,319 + -0.3 4,319 + -0.3 4,319 + -0.2 4,319 + +3.8 4,319 + -0.3 4,319 + -0.8 4,321 + -0.0 4,327 - -1.1 4,327 - +0.3 4,327 - -2.3 4,327 - -2.4 4,327 - +0.3 4,327 - +0.3 4,327 - -0.1 4,327 - +2.6 4,327 - +0.6 4,327 - +0.7 4,327 - -2.7 4,331 + -1.4 4,331 + -0.5 4,341 - -0.4 4,345 + +0.4 4,351 - +0.2 4,351 - +0.1 4,359 - -0.2 4,768 + BBR_RS10270 0.90 -0.4 4,817 + -1.5 4,817 + -0.6 4,819 + -3.1 4,819 + +0.3 4,819 + -3.2 4,819 + -0.7 4,819 + -1.2 4,827 - -1.6 4,827 - +1.6 4,827 - +0.7 4,869 - -0.8 4,968 + -1.9 5,028 + -2.5
Or see this region's nucleotide sequence