Strain Fitness in Bacteroides thetaiotaomicron VPI-5482 around BT2928

Experiment: Varel_Bryant_medium_Glucose with Ceftriaxone hemi(heptahydrate) 0.2 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Varel_Bryant_medium_Glucose with Ceftriaxone hemi(heptahydrate) 0.2 mM
3,679,986	-		BT2927	0.70	-0.4
3,680,074	-		BT2927	0.72	+0.3
3,680,075	+		BT2927	0.72	-1.4
3,680,075	+		BT2927	0.72	-0.9
3,680,075	+		BT2927	0.72	-0.1
3,680,125	-		BT2927	0.74	-2.0
3,680,141	+		BT2927	0.74	-0.6
3,680,142	-		BT2927	0.74	-1.0
3,680,146	+		BT2927	0.75	-1.1
3,680,147	-		BT2927	0.75	+1.0
3,680,151	+		BT2927	0.75	+0.0
3,680,152	-		BT2927	0.75	+2.0
3,680,152	-		BT2927	0.75	-1.1
3,680,152	-		BT2927	0.75	-1.5
3,680,167	-		BT2927	0.75	-0.3
3,680,167	-		BT2927	0.75	-2.0
3,680,216	-		BT2927	0.77	+0.0
3,680,249	+		BT2927	0.78	-1.3
3,680,249	+		BT2927	0.78	-0.4
3,680,250	-		BT2927	0.78	-0.7
3,680,250	-		BT2927	0.78	+0.4
3,680,250	-		BT2927	0.78	+0.7
3,680,250	-		BT2927	0.78	+0.0
3,680,252	+		BT2927	0.78	+2.0
3,680,265	+		BT2927	0.78	-0.6
3,680,318	+		BT2927	0.80	+0.0
3,680,319	-				-1.6
3,680,319	-		BT2927	0.80	-2.2
3,680,421	+		BT2927	0.83	-1.3
3,680,475	+		BT2927	0.85	-0.7
3,680,476	-		BT2927	0.85	-1.3
3,680,484	+		BT2927	0.85	-0.8
3,680,485	-		BT2927	0.85	-2.0
3,680,558	+		BT2927	0.87	-1.0
3,680,558	+		BT2927	0.87	+0.0
3,680,564	+		BT2927	0.88	+0.0
3,680,564	+				-2.0
3,680,564	+		BT2927	0.88	+0.6
3,680,564	+		BT2927	0.88	-0.7
3,680,565	-		BT2927	0.88	-2.3
3,680,565	-		BT2927	0.88	+0.0
3,680,654	+				-0.4
3,680,680	-				-0.6
3,680,685	+				-1.0
3,680,685	-				-1.2
3,680,685	-				+0.0
3,680,688	+				+0.3
3,680,690	+				+0.0
3,680,690	+				-1.3
3,680,691	-				-2.9
3,680,737	+				-0.5
3,680,738	-				-0.4
3,680,772	-				-1.3
3,680,817	+				+0.0
3,680,830	-				+0.0
3,680,832	-				+1.0
3,680,849	+				-1.0
3,680,955	+				-1.6
3,680,982	+				-0.1
3,680,982	+				+0.0
3,680,983	-				+0.6
3,680,983	-				+0.0
3,680,993	+				-1.1
3,681,015	+				-2.3
3,681,020	+				+0.2
3,681,059	+				-1.7
3,681,065	+				-0.7
3,681,065	+				+0.0
3,681,066	-				+0.0
3,681,066	-				+0.0
3,681,068	+				+0.0
3,681,101	+				-1.0
3,681,101	+				-0.3
3,681,122	+				-0.4
3,681,123	-				+0.0
3,681,167	+				-0.9
3,681,167	+				+0.6
3,681,167	+				+1.6
3,681,167	+				+0.0
3,681,209	+				-0.4
3,681,213	+				-2.8
3,681,217	+				+1.0
3,681,232	+				-0.9
3,681,267	+				-0.7
3,681,267	+				+0.0
3,681,335	-		BT2928	0.11	-3.0
3,681,400	+		BT2928	0.13	-1.0
3,681,410	+		BT2928	0.13	-0.5
3,681,411	-		BT2928	0.13	-1.9
3,681,420	-		BT2928	0.13	-1.0
3,681,425	+		BT2928	0.13	-0.2
3,681,426	-		BT2928	0.14	-1.1
3,681,515	-		BT2928	0.16	-1.6
3,681,563	-		BT2928	0.18	-1.7
3,681,563	-		BT2928	0.18	-2.0
3,681,563	-		BT2928	0.18	-1.0
3,681,576	-		BT2928	0.18	+1.0
3,681,576	-		BT2928	0.18	-1.8
3,681,578	+		BT2928	0.18	-1.0
3,681,639	+		BT2928	0.20	+0.3
3,681,639	+		BT2928	0.20	-1.0
3,681,640	-		BT2928	0.20	-1.3
3,681,709	+		BT2928	0.22	+0.0
3,681,798	+		BT2928	0.25	-0.7
3,681,800	+		BT2928	0.25	-1.0
3,681,804	+		BT2928	0.25	-2.6
3,681,804	+		BT2928	0.25	+0.0
3,681,826	+		BT2928	0.25	+1.6
3,681,827	-		BT2928	0.25	+0.0
3,681,854	+		BT2928	0.26	-1.8
3,681,854	+		BT2928	0.26	-0.7
3,681,855	-		BT2928	0.26	-3.0
3,681,942	+		BT2928	0.29	-0.2
3,681,942	+		BT2928	0.29	-1.0
3,681,942	+		BT2928	0.29	+0.4
3,681,942	+		BT2928	0.29	-1.2
3,681,944	+		BT2928	0.29	+0.0
3,681,944	+		BT2928	0.29	-0.8
3,681,945	-		BT2928	0.29	-2.3
3,681,949	-		BT2928	0.29	-1.0
3,681,975	+		BT2928	0.30	-0.8
3,681,982	+		BT2928	0.30	-2.8
3,681,995	+		BT2928	0.30	-2.1
3,682,019	+		BT2928	0.31	+1.0
3,682,042	+		BT2928	0.32	-1.0
3,682,042	+		BT2928	0.32	-0.6
3,682,194	+		BT2928	0.36	+0.0
3,682,231	-		BT2928	0.38	-1.9
3,682,245	+		BT2928	0.38	-0.8
3,682,245	+		BT2928	0.38	+1.0
3,682,265	+		BT2928	0.39	-1.6
3,682,282	-		BT2928	0.39	+0.0
3,682,292	+		BT2928	0.39	+0.7
3,682,293	-		BT2928	0.39	-1.0
3,682,293	-		BT2928	0.39	-1.0
3,682,315	-		BT2928	0.40	-1.0
3,682,348	+		BT2928	0.41	-2.1
3,682,349	-		BT2928	0.41	+0.0
3,682,395	+		BT2928	0.42	-0.6
3,682,405	+		BT2928	0.43	-2.1
3,682,419	+		BT2928	0.43	-1.0
3,682,423	-		BT2928	0.43	-2.0
3,682,430	+		BT2928	0.43	-1.1
3,682,452	-		BT2928	0.44	-1.2
3,682,601	+		BT2928	0.49	-1.1
3,682,601	+		BT2928	0.49	-1.3
3,682,602	-		BT2928	0.49	-1.2
3,682,676	-		BT2928	0.51	-2.0
3,682,683	-		BT2928	0.51	+0.3
3,682,686	+		BT2928	0.51	-0.7
3,682,686	+		BT2928	0.51	-0.7
3,682,695	+		BT2928	0.51	-1.3
3,682,696	-		BT2928	0.51	-1.9
3,682,733	+		BT2928	0.53	+1.0
3,682,747	-		BT2928	0.53	+0.0
3,682,759	+		BT2928	0.53	-2.5
3,682,760	-		BT2928	0.53	-2.7
3,682,791	+		BT2928	0.54	+0.0
3,682,792	-		BT2928	0.54	+0.0
3,682,794	-		BT2928	0.54	-3.0
3,682,839	+		BT2928	0.56	+0.8
3,682,840	-		BT2928	0.56	+0.0
3,682,840	-		BT2928	0.56	+0.0
3,682,851	+		BT2928	0.56	-1.1
3,682,851	+		BT2928	0.56	-0.1
3,682,893	+		BT2928	0.57	-1.0
3,682,899	+		BT2928	0.57	-1.3
3,682,910	-		BT2928	0.58	+1.3
3,683,017	+		BT2928	0.61	-1.5
3,683,019	+		BT2928	0.61	+0.4
3,683,045	+		BT2928	0.62	-1.4
3,683,045	+		BT2928	0.62	+1.0
3,683,045	+		BT2928	0.62	-1.0
3,683,046	-		BT2928	0.62	-1.3
3,683,047	+		BT2928	0.62	+0.6
3,683,047	+		BT2928	0.62	+0.6
3,683,048	-		BT2928	0.62	-1.7
3,683,107	+		BT2928	0.64	-2.1
3,683,150	+		BT2928	0.65	-0.9
3,683,150	+		BT2928	0.65	-1.4
3,683,287	-		BT2928	0.69	-2.0
3,683,319	+		BT2928	0.70	-1.3
3,683,417	-		BT2928	0.73	+0.5
3,683,426	+		BT2928	0.73	-0.8
3,683,426	+		BT2928	0.73	-2.0
3,683,427	-		BT2928	0.73	+1.6
3,683,428	+		BT2928	0.73	-0.3
3,683,428	+		BT2928	0.73	-0.7
3,683,430	+		BT2928	0.73	+0.0
3,683,431	-		BT2928	0.73	-1.0
3,683,431	-		BT2928	0.73	-0.3
3,683,476	-		BT2928	0.75	-4.2
3,683,488	-		BT2928	0.75	-2.0
3,683,569	+		BT2928	0.78	+0.3
3,683,598	+		BT2928	0.78	+0.0
3,683,599	-		BT2928	0.78	+0.6
3,683,601	-		BT2928	0.78	-1.2
3,683,623	-		BT2928	0.79	+0.0
3,683,623	-		BT2928	0.79	-1.0
3,683,697	+		BT2928	0.81	-0.1
3,683,698	-		BT2928	0.81	-0.5
3,683,705	+		BT2928	0.82	+0.6
3,683,733	-		BT2928	0.82	-1.5
3,683,745	+		BT2928	0.83	+0.0
3,683,789	+		BT2928	0.84	-1.0
3,683,790	-		BT2928	0.84	+0.0
3,683,806	-		BT2928	0.85	-3.3
3,683,830	-		BT2928	0.85	-1.1
3,683,835	+		BT2928	0.85	-0.8
3,683,835	+		BT2928	0.85	+0.0
3,683,842	+		BT2928	0.86	+1.0
3,683,843	-		BT2928	0.86	-3.0
3,683,848	+		BT2928	0.86	-3.6
3,683,923	-		BT2928	0.88	-0.6
3,683,947	-		BT2928	0.89	-2.3
3,684,027	+				-0.4
3,684,029	+				+0.4
3,684,042	+				-2.0
3,684,043	-				-0.9
3,684,046	-				-1.6
3,684,046	-				+0.0
3,684,046	-				-0.2
3,684,067	+				-0.9
3,684,128	+				-1.4
3,684,128	+				+2.0
3,684,128	+				-0.7
3,684,129	-				-1.1
3,684,130	+				-1.0
3,684,130	+				-1.0
3,684,131	-				+0.0
3,684,131	-				-1.1
3,684,131	-				-0.4
3,684,150	+				-0.6
3,684,150	+				-1.6
3,684,151	-				+0.0
3,684,219	+				-1.9
3,684,259	-				-0.4
3,684,259	-				-2.2
3,684,282	-				-1.6
3,684,331	-				-0.7
3,684,334	+				-0.2
3,684,367	+				-2.0
3,684,367	+				-1.3
3,684,367	+				+1.6
3,684,367	+				+1.0
3,684,409	-				-0.7
3,684,434	+				-2.0
3,684,449	-				+1.0
3,684,455	+				+0.3
3,684,455	+				+0.0
3,684,471	-				+0.0
3,684,491	+				-0.9
3,684,503	-				-1.5
3,684,571	+				-1.7
3,684,571	-				-1.3
3,684,690	+				-0.8
3,684,715	+				-1.4
3,684,734	+				+0.7
3,684,772	+				-2.0
3,684,780	-				-0.6
3,684,833	-				-0.3
3,684,965	+				-1.3
3,684,991	+				-0.8
3,685,026	+				-1.0
3,685,121	-				-0.8
3,685,123	-				+0.0
3,685,125	-				-1.7
3,685,282	+		BT2929	0.31	-0.6