Experiment: diet=StandardDiet; sample=FecalPellet; treatment=Methotrexate; mouse16; day3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BBR_RS13170 and BBR_RS13175 are separated by 39 nucleotides BBR_RS13175 and BBR_RS13180 are separated by 183 nucleotides
BBR_RS13170: BBR_RS13170 - alanine racemase, at 730,783 to 732,141
_RS13170
BBR_RS13175: BBR_RS13175 - deoxyguanosinetriphosphate triphosphohydrolase, at 732,181 to 733,467
_RS13175
BBR_RS13180: BBR_RS13180 - DNA primase, at 733,651 to 735,753
_RS13180
Position (kb) 732
733
734 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 732.136 kb on + strand at 732.136 kb on + strand at 732.144 kb on - strand at 732.144 kb on - strand at 732.144 kb on - strand at 732.144 kb on - strand at 732.171 kb on + strand at 732.171 kb on + strand at 732.215 kb on - strand at 732.222 kb on + strand at 732.230 kb on - strand at 732.269 kb on + strand at 732.270 kb on + strand at 732.278 kb on - strand at 732.278 kb on - strand at 732.310 kb on - strand, within BBR_RS13175 at 732.343 kb on - strand, within BBR_RS13175 at 732.391 kb on + strand, within BBR_RS13175 at 732.394 kb on - strand, within BBR_RS13175 at 732.412 kb on - strand, within BBR_RS13175 at 732.423 kb on - strand, within BBR_RS13175 at 732.450 kb on - strand, within BBR_RS13175 at 732.513 kb on + strand, within BBR_RS13175 at 732.574 kb on + strand, within BBR_RS13175 at 732.641 kb on + strand, within BBR_RS13175 at 732.714 kb on + strand, within BBR_RS13175 at 732.763 kb on + strand, within BBR_RS13175 at 732.851 kb on + strand, within BBR_RS13175 at 732.858 kb on + strand, within BBR_RS13175 at 732.977 kb on + strand, within BBR_RS13175 at 732.992 kb on - strand, within BBR_RS13175 at 733.005 kb on + strand, within BBR_RS13175 at 733.015 kb on + strand, within BBR_RS13175 at 733.020 kb on + strand, within BBR_RS13175 at 733.028 kb on - strand, within BBR_RS13175 at 733.028 kb on - strand, within BBR_RS13175 at 733.028 kb on - strand, within BBR_RS13175 at 733.048 kb on + strand, within BBR_RS13175 at 733.178 kb on - strand, within BBR_RS13175 at 733.291 kb on + strand, within BBR_RS13175 at 733.328 kb on + strand, within BBR_RS13175 at 733.329 kb on - strand, within BBR_RS13175 at 733.350 kb on + strand at 733.350 kb on + strand at 733.369 kb on - strand at 733.369 kb on - strand at 733.402 kb on + strand at 733.409 kb on + strand at 733.451 kb on + strand at 733.451 kb on + strand at 733.455 kb on - strand at 733.459 kb on - strand at 733.459 kb on - strand at 733.461 kb on + strand at 733.487 kb on + strand at 733.495 kb on + strand at 733.527 kb on + strand at 733.527 kb on + strand at 733.532 kb on + strand at 733.535 kb on - strand at 733.555 kb on + strand at 733.555 kb on + strand at 733.561 kb on - strand at 733.572 kb on + strand at 733.580 kb on - strand at 733.589 kb on - strand at 733.645 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction diet=StandardDiet; sample=FecalPellet; treatment=Methotrexate; mouse16; day3 remove 732,136 + +1.0 732,136 + -1.2 732,144 - -1.4 732,144 - +1.6 732,144 - -2.0 732,144 - -1.4 732,171 + +0.9 732,171 + -0.3 732,215 - +2.2 732,222 + +1.7 732,230 - +1.3 732,269 + -2.6 732,270 + +0.6 732,278 - -0.6 732,278 - +0.6 732,310 - BBR_RS13175 0.10 +2.2 732,343 - BBR_RS13175 0.13 -0.5 732,391 + BBR_RS13175 0.16 +0.1 732,394 - BBR_RS13175 0.17 -2.0 732,412 - BBR_RS13175 0.18 -1.5 732,423 - BBR_RS13175 0.19 -2.1 732,450 - BBR_RS13175 0.21 +0.3 732,513 + BBR_RS13175 0.26 +1.7 732,574 + BBR_RS13175 0.31 -1.6 732,641 + BBR_RS13175 0.36 +0.9 732,714 + BBR_RS13175 0.41 -0.7 732,763 + BBR_RS13175 0.45 +0.5 732,851 + BBR_RS13175 0.52 -2.0 732,858 + BBR_RS13175 0.53 -1.4 732,977 + BBR_RS13175 0.62 +0.5 732,992 - BBR_RS13175 0.63 -0.6 733,005 + BBR_RS13175 0.64 -2.6 733,015 + BBR_RS13175 0.65 -2.8 733,020 + BBR_RS13175 0.65 +0.8 733,028 - BBR_RS13175 0.66 -1.7 733,028 - BBR_RS13175 0.66 -0.4 733,028 - BBR_RS13175 0.66 -1.5 733,048 + BBR_RS13175 0.67 -2.9 733,178 - BBR_RS13175 0.77 -1.0 733,291 + BBR_RS13175 0.86 +0.0 733,328 + BBR_RS13175 0.89 +0.1 733,329 - BBR_RS13175 0.89 +3.3 733,350 + +1.5 733,350 + -0.6 733,369 - -0.7 733,369 - +1.6 733,402 + +1.0 733,409 + -0.0 733,451 + +0.7 733,451 + +0.5 733,455 - -1.5 733,459 - -1.1 733,459 - +1.1 733,461 + +1.1 733,487 + +2.8 733,495 + -0.0 733,527 + -0.2 733,527 + -0.1 733,532 + -2.4 733,535 - -0.6 733,555 + -1.9 733,555 + -0.1 733,561 - +0.2 733,572 + +0.5 733,580 - -0.8 733,589 - +0.5 733,645 + +1.1
Or see this region's nucleotide sequence