Experiment: diet=HighFatHighSugar; sample=FecalPellet; mouse15; day3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BBR_RS13140 and BBR_RS13145 are separated by 189 nucleotides BBR_RS13145 and BBR_RS13150 are separated by 305 nucleotides
BBR_RS13140: BBR_RS13140 - cysteine synthase, at 723,182 to 724,204
_RS13140
BBR_RS13145: BBR_RS13145 - cystathionine gamma-synthase, at 724,394 to 725,578
_RS13145
BBR_RS13150: BBR_RS13150 - DNA helicase RecQ, at 725,884 to 727,803
_RS13150
Position (kb) 724
725
726 Strain fitness (log2 ratio) -2
-1
0
1
2 at 723.404 kb on + strand, within BBR_RS13140 at 723.409 kb on + strand, within BBR_RS13140 at 723.428 kb on - strand, within BBR_RS13140 at 723.428 kb on - strand, within BBR_RS13140 at 723.458 kb on + strand, within BBR_RS13140 at 723.458 kb on + strand, within BBR_RS13140 at 723.466 kb on - strand, within BBR_RS13140 at 723.500 kb on + strand, within BBR_RS13140 at 723.518 kb on + strand, within BBR_RS13140 at 723.524 kb on - strand, within BBR_RS13140 at 723.524 kb on - strand, within BBR_RS13140 at 723.595 kb on - strand, within BBR_RS13140 at 723.618 kb on + strand, within BBR_RS13140 at 723.631 kb on - strand, within BBR_RS13140 at 723.658 kb on + strand, within BBR_RS13140 at 723.658 kb on + strand, within BBR_RS13140 at 723.666 kb on - strand, within BBR_RS13140 at 723.666 kb on - strand, within BBR_RS13140 at 723.773 kb on + strand, within BBR_RS13140 at 723.781 kb on - strand, within BBR_RS13140 at 723.781 kb on - strand, within BBR_RS13140 at 723.796 kb on + strand, within BBR_RS13140 at 723.796 kb on - strand, within BBR_RS13140 at 723.801 kb on + strand, within BBR_RS13140 at 723.804 kb on - strand, within BBR_RS13140 at 723.828 kb on + strand, within BBR_RS13140 at 723.828 kb on + strand, within BBR_RS13140 at 723.828 kb on + strand, within BBR_RS13140 at 723.836 kb on - strand, within BBR_RS13140 at 723.836 kb on - strand, within BBR_RS13140 at 723.854 kb on + strand, within BBR_RS13140 at 723.862 kb on + strand, within BBR_RS13140 at 723.878 kb on - strand, within BBR_RS13140 at 723.881 kb on + strand, within BBR_RS13140 at 723.883 kb on + strand, within BBR_RS13140 at 723.891 kb on - strand, within BBR_RS13140 at 723.922 kb on + strand, within BBR_RS13140 at 724.013 kb on + strand, within BBR_RS13140 at 724.013 kb on + strand, within BBR_RS13140 at 724.021 kb on - strand, within BBR_RS13140 at 724.021 kb on - strand, within BBR_RS13140 at 724.026 kb on - strand, within BBR_RS13140 at 724.035 kb on - strand, within BBR_RS13140 at 724.088 kb on + strand, within BBR_RS13140 at 724.170 kb on + strand at 724.170 kb on + strand at 724.178 kb on - strand at 724.178 kb on - strand at 724.258 kb on + strand at 724.266 kb on + strand at 724.266 kb on - strand at 724.300 kb on + strand at 724.354 kb on - strand at 724.364 kb on - strand at 724.374 kb on + strand at 724.400 kb on + strand at 724.419 kb on - strand at 724.456 kb on - strand at 724.460 kb on - strand at 724.465 kb on - strand at 724.465 kb on - strand at 724.482 kb on + strand at 724.508 kb on + strand at 724.529 kb on + strand, within BBR_RS13145 at 724.611 kb on - strand, within BBR_RS13145 at 724.631 kb on + strand, within BBR_RS13145 at 724.644 kb on + strand, within BBR_RS13145 at 724.728 kb on - strand, within BBR_RS13145 at 724.729 kb on - strand, within BBR_RS13145 at 724.734 kb on - strand, within BBR_RS13145 at 724.746 kb on + strand, within BBR_RS13145 at 724.755 kb on - strand, within BBR_RS13145 at 724.776 kb on + strand, within BBR_RS13145 at 724.792 kb on - strand, within BBR_RS13145 at 724.792 kb on - strand, within BBR_RS13145 at 724.792 kb on - strand, within BBR_RS13145 at 724.852 kb on + strand, within BBR_RS13145 at 724.852 kb on + strand, within BBR_RS13145 at 724.910 kb on - strand, within BBR_RS13145 at 724.916 kb on + strand, within BBR_RS13145 at 724.921 kb on + strand, within BBR_RS13145 at 724.942 kb on + strand, within BBR_RS13145 at 724.951 kb on - strand, within BBR_RS13145 at 724.953 kb on - strand, within BBR_RS13145 at 725.023 kb on - strand, within BBR_RS13145 at 725.028 kb on - strand, within BBR_RS13145 at 725.042 kb on - strand, within BBR_RS13145 at 725.052 kb on + strand, within BBR_RS13145 at 725.052 kb on + strand, within BBR_RS13145 at 725.054 kb on + strand, within BBR_RS13145 at 725.055 kb on - strand, within BBR_RS13145 at 725.109 kb on - strand, within BBR_RS13145 at 725.115 kb on + strand, within BBR_RS13145 at 725.302 kb on - strand, within BBR_RS13145 at 725.366 kb on + strand, within BBR_RS13145 at 725.374 kb on - strand, within BBR_RS13145 at 725.413 kb on + strand, within BBR_RS13145 at 725.456 kb on + strand, within BBR_RS13145 at 725.456 kb on + strand, within BBR_RS13145 at 725.486 kb on - strand at 725.500 kb on + strand at 725.503 kb on + strand at 725.547 kb on - strand at 725.550 kb on + strand at 725.578 kb on - strand at 725.647 kb on - strand at 725.718 kb on - strand at 725.838 kb on + strand at 725.883 kb on + strand at 725.883 kb on + strand at 725.890 kb on + strand at 725.890 kb on + strand at 725.905 kb on - strand at 725.928 kb on - strand at 725.958 kb on - strand at 725.965 kb on + strand at 725.991 kb on - strand at 725.995 kb on - strand at 726.062 kb on + strand at 726.070 kb on - strand at 726.085 kb on + strand, within BBR_RS13150 at 726.090 kb on - strand, within BBR_RS13150 at 726.106 kb on - strand, within BBR_RS13150 at 726.116 kb on - strand, within BBR_RS13150 at 726.169 kb on + strand, within BBR_RS13150 at 726.186 kb on - strand, within BBR_RS13150 at 726.205 kb on + strand, within BBR_RS13150 at 726.227 kb on - strand, within BBR_RS13150 at 726.344 kb on + strand, within BBR_RS13150 at 726.352 kb on - strand, within BBR_RS13150 at 726.389 kb on - strand, within BBR_RS13150 at 726.424 kb on - strand, within BBR_RS13150 at 726.488 kb on + strand, within BBR_RS13150 at 726.512 kb on - strand, within BBR_RS13150 at 726.513 kb on - strand, within BBR_RS13150 at 726.527 kb on - strand, within BBR_RS13150
Per-strain Table
Position Strand Gene LocusTag Fraction diet=HighFatHighSugar; sample=FecalPellet; mouse15; day3 remove 723,404 + BBR_RS13140 0.22 -1.2 723,409 + BBR_RS13140 0.22 -0.5 723,428 - BBR_RS13140 0.24 +0.5 723,428 - BBR_RS13140 0.24 -2.6 723,458 + BBR_RS13140 0.27 +0.3 723,458 + BBR_RS13140 0.27 +0.7 723,466 - BBR_RS13140 0.28 -0.0 723,500 + BBR_RS13140 0.31 +0.6 723,518 + BBR_RS13140 0.33 -1.7 723,524 - BBR_RS13140 0.33 +0.3 723,524 - BBR_RS13140 0.33 +1.0 723,595 - BBR_RS13140 0.40 -0.3 723,618 + BBR_RS13140 0.43 +1.3 723,631 - BBR_RS13140 0.44 -0.9 723,658 + BBR_RS13140 0.47 +0.8 723,658 + BBR_RS13140 0.47 -1.8 723,666 - BBR_RS13140 0.47 +0.4 723,666 - BBR_RS13140 0.47 +0.6 723,773 + BBR_RS13140 0.58 +0.2 723,781 - BBR_RS13140 0.59 -0.6 723,781 - BBR_RS13140 0.59 -1.0 723,796 + BBR_RS13140 0.60 -2.5 723,796 - BBR_RS13140 0.60 +0.2 723,801 + BBR_RS13140 0.61 +0.7 723,804 - BBR_RS13140 0.61 +1.0 723,828 + BBR_RS13140 0.63 -0.9 723,828 + BBR_RS13140 0.63 +0.2 723,828 + BBR_RS13140 0.63 -1.3 723,836 - BBR_RS13140 0.64 +0.2 723,836 - BBR_RS13140 0.64 -0.7 723,854 + BBR_RS13140 0.66 +0.3 723,862 + BBR_RS13140 0.66 +0.4 723,878 - BBR_RS13140 0.68 -0.2 723,881 + BBR_RS13140 0.68 +0.9 723,883 + BBR_RS13140 0.69 -1.7 723,891 - BBR_RS13140 0.69 +1.0 723,922 + BBR_RS13140 0.72 -1.2 724,013 + BBR_RS13140 0.81 +0.1 724,013 + BBR_RS13140 0.81 +1.8 724,021 - BBR_RS13140 0.82 +1.2 724,021 - BBR_RS13140 0.82 -0.2 724,026 - BBR_RS13140 0.83 +0.3 724,035 - BBR_RS13140 0.83 -0.3 724,088 + BBR_RS13140 0.89 -1.7 724,170 + +1.2 724,170 + -0.5 724,178 - +0.2 724,178 - -1.6 724,258 + -1.4 724,266 + +1.4 724,266 - -0.7 724,300 + +0.2 724,354 - +1.5 724,364 - +0.4 724,374 + +1.4 724,400 + -0.4 724,419 - +2.1 724,456 - +2.2 724,460 - +1.1 724,465 - +2.1 724,465 - -0.8 724,482 + +1.9 724,508 + +1.2 724,529 + BBR_RS13145 0.11 -1.4 724,611 - BBR_RS13145 0.18 +0.2 724,631 + BBR_RS13145 0.20 -0.4 724,644 + BBR_RS13145 0.21 -0.5 724,728 - BBR_RS13145 0.28 -2.4 724,729 - BBR_RS13145 0.28 -0.7 724,734 - BBR_RS13145 0.29 -1.2 724,746 + BBR_RS13145 0.30 +1.3 724,755 - BBR_RS13145 0.30 +0.9 724,776 + BBR_RS13145 0.32 -1.0 724,792 - BBR_RS13145 0.34 +0.3 724,792 - BBR_RS13145 0.34 +1.4 724,792 - BBR_RS13145 0.34 -0.9 724,852 + BBR_RS13145 0.39 -1.9 724,852 + BBR_RS13145 0.39 +0.4 724,910 - BBR_RS13145 0.44 +0.4 724,916 + BBR_RS13145 0.44 -0.5 724,921 + BBR_RS13145 0.44 -0.1 724,942 + BBR_RS13145 0.46 +1.1 724,951 - BBR_RS13145 0.47 -1.5 724,953 - BBR_RS13145 0.47 +1.9 725,023 - BBR_RS13145 0.53 -1.2 725,028 - BBR_RS13145 0.54 -0.0 725,042 - BBR_RS13145 0.55 -0.8 725,052 + BBR_RS13145 0.56 +0.4 725,052 + BBR_RS13145 0.56 +0.7 725,054 + BBR_RS13145 0.56 +0.3 725,055 - BBR_RS13145 0.56 -1.3 725,109 - BBR_RS13145 0.60 +1.5 725,115 + BBR_RS13145 0.61 -0.1 725,302 - BBR_RS13145 0.77 -0.1 725,366 + BBR_RS13145 0.82 +0.7 725,374 - BBR_RS13145 0.83 +0.0 725,413 + BBR_RS13145 0.86 +0.3 725,456 + BBR_RS13145 0.90 -1.2 725,456 + BBR_RS13145 0.90 +0.6 725,486 - -0.8 725,500 + -0.8 725,503 + -0.5 725,547 - -0.1 725,550 + -0.8 725,578 - -1.4 725,647 - +0.1 725,718 - +0.1 725,838 + -0.9 725,883 + +0.4 725,883 + +2.6 725,890 + +1.5 725,890 + -0.2 725,905 - +0.6 725,928 - -0.5 725,958 - +0.7 725,965 + +2.0 725,991 - +1.3 725,995 - +0.7 726,062 + -0.8 726,070 - +0.4 726,085 + BBR_RS13150 0.10 +0.3 726,090 - BBR_RS13150 0.11 +0.5 726,106 - BBR_RS13150 0.12 -1.4 726,116 - BBR_RS13150 0.12 -0.5 726,169 + BBR_RS13150 0.15 +1.5 726,186 - BBR_RS13150 0.16 +0.6 726,205 + BBR_RS13150 0.17 +0.5 726,227 - BBR_RS13150 0.18 -0.9 726,344 + BBR_RS13150 0.24 -0.6 726,352 - BBR_RS13150 0.24 -0.3 726,389 - BBR_RS13150 0.26 +1.2 726,424 - BBR_RS13150 0.28 -1.9 726,488 + BBR_RS13150 0.31 +0.6 726,512 - BBR_RS13150 0.33 +0.6 726,513 - BBR_RS13150 0.33 -0.2 726,527 - BBR_RS13150 0.33 +1.2
Or see this region's nucleotide sequence