Strain Fitness in Bifidobacterium breve UCC2003 around BBR_RS13110

Experiment: diet=HighFatHighSugar; sample=FecalPellet; mouse15; day3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBBR_RS13105 and BBR_RS13110 are separated by 93 nucleotidesBBR_RS13110 and BBR_RS13115 are separated by 126 nucleotides BBR_RS13105: BBR_RS13105 - sugar ABC transporter substrate-binding protein, at 715,037 to 716,458 _RS13105 BBR_RS13110: BBR_RS13110 - type III pantothenate kinase, at 716,552 to 717,322 _RS13110 BBR_RS13115: BBR_RS13115 - Solute-binding protein of ABC transporter system for peptide, at 717,449 to 719,083 _RS13115 Position (kb) 716 717 718Strain fitness (log2 ratio) -2 -1 0 1 2 3 4 5at 716.474 kb on - strandat 716.527 kb on - strandat 716.527 kb on - strandat 716.604 kb on + strandat 716.639 kb on - strand, within BBR_RS13110at 716.670 kb on + strand, within BBR_RS13110at 716.671 kb on + strand, within BBR_RS13110at 716.737 kb on - strand, within BBR_RS13110at 716.737 kb on - strand, within BBR_RS13110at 716.739 kb on + strand, within BBR_RS13110at 716.739 kb on + strand, within BBR_RS13110at 716.739 kb on + strand, within BBR_RS13110at 716.747 kb on - strand, within BBR_RS13110at 716.765 kb on + strand, within BBR_RS13110at 716.842 kb on + strand, within BBR_RS13110at 716.901 kb on - strand, within BBR_RS13110at 716.903 kb on - strand, within BBR_RS13110at 716.970 kb on - strand, within BBR_RS13110at 717.031 kb on + strand, within BBR_RS13110at 717.039 kb on - strand, within BBR_RS13110at 717.039 kb on - strand, within BBR_RS13110at 717.099 kb on - strand, within BBR_RS13110at 717.117 kb on + strand, within BBR_RS13110at 717.117 kb on + strand, within BBR_RS13110at 717.117 kb on + strand, within BBR_RS13110at 717.118 kb on - strand, within BBR_RS13110at 717.125 kb on - strand, within BBR_RS13110at 717.126 kb on - strand, within BBR_RS13110at 717.135 kb on - strand, within BBR_RS13110at 717.163 kb on + strand, within BBR_RS13110at 717.171 kb on - strand, within BBR_RS13110at 717.216 kb on + strand, within BBR_RS13110at 717.218 kb on + strand, within BBR_RS13110at 717.388 kb on + strandat 717.391 kb on - strandat 717.391 kb on - strandat 717.396 kb on - strandat 717.396 kb on - strandat 717.984 kb on - strand, within BBR_RS13115

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Per-strain Table

Position Strand Gene LocusTag Fraction diet=HighFatHighSugar; sample=FecalPellet; mouse15; day3
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716,474 - -1.2
716,527 - -1.3
716,527 - +0.4
716,604 + +2.3
716,639 - BBR_RS13110 0.11 -0.0
716,670 + BBR_RS13110 0.15 -0.4
716,671 + BBR_RS13110 0.15 -0.6
716,737 - BBR_RS13110 0.24 +2.3
716,737 - BBR_RS13110 0.24 +0.1
716,739 + BBR_RS13110 0.24 -0.3
716,739 + BBR_RS13110 0.24 -1.5
716,739 + BBR_RS13110 0.24 -0.0
716,747 - BBR_RS13110 0.25 -0.6
716,765 + BBR_RS13110 0.28 -1.3
716,842 + BBR_RS13110 0.38 -2.0
716,901 - BBR_RS13110 0.45 +0.7
716,903 - BBR_RS13110 0.46 +0.7
716,970 - BBR_RS13110 0.54 -0.4
717,031 + BBR_RS13110 0.62 +0.2
717,039 - BBR_RS13110 0.63 -0.6
717,039 - BBR_RS13110 0.63 +0.0
717,099 - BBR_RS13110 0.71 -1.4
717,117 + BBR_RS13110 0.73 -0.6
717,117 + BBR_RS13110 0.73 +2.8
717,117 + BBR_RS13110 0.73 -0.1
717,118 - BBR_RS13110 0.73 +1.9
717,125 - BBR_RS13110 0.74 -0.1
717,126 - BBR_RS13110 0.74 +0.2
717,135 - BBR_RS13110 0.76 +0.6
717,163 + BBR_RS13110 0.79 -0.5
717,171 - BBR_RS13110 0.80 -1.8
717,216 + BBR_RS13110 0.86 +1.3
717,218 + BBR_RS13110 0.86 +0.3
717,388 + -1.2
717,391 - +0.8
717,391 - +0.6
717,396 - -0.7
717,396 - +0.5
717,984 - BBR_RS13115 0.33 +5.1

Or see this region's nucleotide sequence