Experiment: Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=root; GrowthSubstrate=sterile_soil; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=19_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE53_005010 and ABIE53_005011 are separated by 262 nucleotides ABIE53_005011 and ABIE53_005012 are separated by 250 nucleotides
ABIE53_005010: ABIE53_005010 - succinate-semialdehyde dehydrogenase/glutarate-semialdehyde dehydrogenase, at 1,247,963 to 1,249,435
_005010
ABIE53_005011: ABIE53_005011 - DNA-binding LacI/PurR family transcriptional regulator, at 1,249,698 to 1,250,714
_005011
ABIE53_005012: ABIE53_005012 - multiple sugar transport system ATP-binding protein, at 1,250,965 to 1,252,104
_005012
Position (kb) 1249
1250
1251 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 1248.743 kb on + strand, within ABIE53_005010 at 1249.051 kb on - strand, within ABIE53_005010 at 1249.087 kb on - strand, within ABIE53_005010 at 1249.087 kb on - strand, within ABIE53_005010 at 1249.098 kb on + strand, within ABIE53_005010 at 1249.099 kb on - strand, within ABIE53_005010 at 1249.388 kb on - strand at 1249.538 kb on + strand at 1249.538 kb on + strand at 1249.550 kb on - strand at 1249.550 kb on - strand at 1249.622 kb on + strand at 1250.395 kb on + strand, within ABIE53_005011 at 1250.395 kb on + strand, within ABIE53_005011 at 1250.396 kb on - strand, within ABIE53_005011 at 1250.396 kb on - strand, within ABIE53_005011 at 1250.396 kb on - strand, within ABIE53_005011 at 1250.406 kb on + strand, within ABIE53_005011 at 1250.407 kb on - strand, within ABIE53_005011 at 1250.407 kb on - strand, within ABIE53_005011 at 1250.407 kb on - strand, within ABIE53_005011 at 1250.779 kb on + strand at 1250.780 kb on - strand at 1250.780 kb on - strand at 1250.780 kb on - strand at 1250.780 kb on - strand at 1250.780 kb on - strand at 1250.891 kb on + strand at 1250.970 kb on + strand at 1250.970 kb on + strand at 1250.971 kb on - strand at 1251.001 kb on + strand at 1251.002 kb on - strand at 1251.002 kb on - strand at 1251.218 kb on - strand, within ABIE53_005012 at 1251.535 kb on + strand, within ABIE53_005012 at 1251.535 kb on + strand, within ABIE53_005012 at 1251.535 kb on + strand, within ABIE53_005012 at 1251.536 kb on - strand, within ABIE53_005012 at 1251.656 kb on - strand, within ABIE53_005012 at 1251.710 kb on - strand, within ABIE53_005012
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=root; GrowthSubstrate=sterile_soil; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=19_days remove 1,248,743 + ABIE53_005010 0.53 -0.8 1,249,051 - ABIE53_005010 0.74 -0.9 1,249,087 - ABIE53_005010 0.76 +0.1 1,249,087 - ABIE53_005010 0.76 -1.6 1,249,098 + ABIE53_005010 0.77 -1.2 1,249,099 - ABIE53_005010 0.77 +1.3 1,249,388 - +0.4 1,249,538 + -0.9 1,249,538 + -0.3 1,249,550 - +1.1 1,249,550 - +0.5 1,249,622 + -0.5 1,250,395 + ABIE53_005011 0.69 +0.0 1,250,395 + ABIE53_005011 0.69 -0.1 1,250,396 - ABIE53_005011 0.69 -1.7 1,250,396 - ABIE53_005011 0.69 +1.3 1,250,396 - ABIE53_005011 0.69 +0.1 1,250,406 + ABIE53_005011 0.70 +2.8 1,250,407 - ABIE53_005011 0.70 +0.1 1,250,407 - ABIE53_005011 0.70 -0.1 1,250,407 - ABIE53_005011 0.70 +1.2 1,250,779 + -1.3 1,250,780 - -0.2 1,250,780 - -1.6 1,250,780 - -0.2 1,250,780 - +0.5 1,250,780 - -0.3 1,250,891 + +0.5 1,250,970 + -1.5 1,250,970 + +0.3 1,250,971 - -0.1 1,251,001 + -1.1 1,251,002 - +1.9 1,251,002 - +0.3 1,251,218 - ABIE53_005012 0.22 -0.9 1,251,535 + ABIE53_005012 0.50 -0.4 1,251,535 + ABIE53_005012 0.50 -2.0 1,251,535 + ABIE53_005012 0.50 +1.3 1,251,536 - ABIE53_005012 0.50 +4.1 1,251,656 - ABIE53_005012 0.61 -1.6 1,251,710 - ABIE53_005012 0.65 +1.1
Or see this region's nucleotide sequence