Experiment: Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=root; GrowthSubstrate=sterile_soil; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=19_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE53_004168 and ABIE53_004169 are separated by 172 nucleotides ABIE53_004169 and ABIE53_004170 are separated by 15 nucleotides ABIE53_004170 and ABIE53_004171 are separated by 2 nucleotides
ABIE53_004168: ABIE53_004168 - transcriptional regulator with XRE-family HTH domain, at 342,156 to 342,728
_004168
ABIE53_004169: ABIE53_004169 - oligopeptide transport system substrate-binding protein, at 342,901 to 344,529
_004169
ABIE53_004170: ABIE53_004170 - oligopeptide transport system permease protein, at 344,545 to 345,483
_004170
ABIE53_004171: ABIE53_004171 - oligopeptide transport system permease protein, at 345,486 to 346,400
_004171
Position (kb) 342
343
344
345 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 341.912 kb on - strand at 341.942 kb on - strand at 342.014 kb on + strand at 342.015 kb on - strand at 342.015 kb on - strand at 342.029 kb on + strand at 342.029 kb on + strand at 342.029 kb on + strand at 342.030 kb on - strand at 342.030 kb on - strand at 342.030 kb on - strand at 342.030 kb on - strand at 342.030 kb on - strand at 342.155 kb on + strand at 342.156 kb on - strand at 342.173 kb on + strand at 342.197 kb on - strand at 342.197 kb on - strand at 342.366 kb on + strand, within ABIE53_004168 at 342.366 kb on + strand, within ABIE53_004168 at 342.563 kb on + strand, within ABIE53_004168 at 342.563 kb on + strand, within ABIE53_004168 at 342.567 kb on + strand, within ABIE53_004168 at 342.567 kb on + strand, within ABIE53_004168 at 342.567 kb on + strand, within ABIE53_004168 at 342.567 kb on + strand, within ABIE53_004168 at 342.568 kb on - strand, within ABIE53_004168 at 342.568 kb on - strand, within ABIE53_004168 at 342.643 kb on - strand, within ABIE53_004168 at 342.663 kb on - strand, within ABIE53_004168 at 342.841 kb on + strand at 343.310 kb on - strand, within ABIE53_004169 at 343.310 kb on - strand, within ABIE53_004169 at 343.402 kb on + strand, within ABIE53_004169 at 343.549 kb on + strand, within ABIE53_004169 at 343.549 kb on + strand, within ABIE53_004169 at 343.549 kb on + strand, within ABIE53_004169 at 343.549 kb on + strand, within ABIE53_004169 at 343.549 kb on + strand, within ABIE53_004169 at 343.549 kb on + strand, within ABIE53_004169 at 343.550 kb on - strand, within ABIE53_004169 at 343.646 kb on - strand, within ABIE53_004169 at 343.684 kb on + strand, within ABIE53_004169 at 343.684 kb on + strand, within ABIE53_004169 at 343.684 kb on + strand, within ABIE53_004169 at 343.685 kb on - strand, within ABIE53_004169 at 343.711 kb on + strand, within ABIE53_004169 at 343.712 kb on - strand, within ABIE53_004169 at 343.792 kb on + strand, within ABIE53_004169 at 343.792 kb on + strand, within ABIE53_004169 at 343.793 kb on - strand, within ABIE53_004169 at 343.793 kb on - strand, within ABIE53_004169 at 343.795 kb on + strand, within ABIE53_004169 at 343.795 kb on + strand, within ABIE53_004169 at 343.796 kb on - strand, within ABIE53_004169 at 343.798 kb on + strand, within ABIE53_004169 at 343.798 kb on + strand, within ABIE53_004169 at 343.919 kb on - strand, within ABIE53_004169 at 343.919 kb on - strand, within ABIE53_004169 at 343.919 kb on - strand, within ABIE53_004169 at 343.919 kb on - strand, within ABIE53_004169 at 344.068 kb on + strand, within ABIE53_004169 at 344.069 kb on - strand, within ABIE53_004169 at 344.164 kb on + strand, within ABIE53_004169 at 344.179 kb on - strand, within ABIE53_004169 at 344.455 kb on + strand at 344.455 kb on + strand at 344.456 kb on - strand at 344.459 kb on + strand at 344.482 kb on + strand at 344.483 kb on - strand at 344.483 kb on - strand at 344.512 kb on + strand at 344.512 kb on + strand at 344.513 kb on - strand at 344.513 kb on - strand at 344.513 kb on - strand at 344.527 kb on + strand at 344.556 kb on + strand at 344.614 kb on + strand at 344.614 kb on + strand at 344.614 kb on + strand at 344.615 kb on - strand at 344.701 kb on + strand, within ABIE53_004170 at 344.732 kb on - strand, within ABIE53_004170 at 344.741 kb on - strand, within ABIE53_004170 at 345.376 kb on + strand, within ABIE53_004170 at 345.376 kb on + strand, within ABIE53_004170 at 345.377 kb on - strand, within ABIE53_004170
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=root; GrowthSubstrate=sterile_soil; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=19_days remove 341,912 - +1.7 341,942 - -0.8 342,014 + -1.3 342,015 - +0.8 342,015 - -0.4 342,029 + -0.5 342,029 + -0.7 342,029 + +0.1 342,030 - +0.6 342,030 - -2.2 342,030 - +0.2 342,030 - -1.8 342,030 - -0.5 342,155 + +0.6 342,156 - -1.3 342,173 + -0.8 342,197 - +0.2 342,197 - -1.5 342,366 + ABIE53_004168 0.37 -0.4 342,366 + ABIE53_004168 0.37 +0.7 342,563 + ABIE53_004168 0.71 -0.2 342,563 + ABIE53_004168 0.71 +0.2 342,567 + ABIE53_004168 0.72 -1.0 342,567 + ABIE53_004168 0.72 -0.5 342,567 + ABIE53_004168 0.72 -0.5 342,567 + ABIE53_004168 0.72 -0.9 342,568 - ABIE53_004168 0.72 +1.3 342,568 - ABIE53_004168 0.72 -1.0 342,643 - ABIE53_004168 0.85 -1.2 342,663 - ABIE53_004168 0.88 -1.2 342,841 + +3.3 343,310 - ABIE53_004169 0.25 -1.4 343,310 - ABIE53_004169 0.25 -2.5 343,402 + ABIE53_004169 0.31 +2.3 343,549 + ABIE53_004169 0.40 -0.2 343,549 + ABIE53_004169 0.40 -1.4 343,549 + ABIE53_004169 0.40 +0.1 343,549 + ABIE53_004169 0.40 +0.9 343,549 + ABIE53_004169 0.40 -1.4 343,549 + ABIE53_004169 0.40 +0.1 343,550 - ABIE53_004169 0.40 +0.6 343,646 - ABIE53_004169 0.46 -0.3 343,684 + ABIE53_004169 0.48 +2.1 343,684 + ABIE53_004169 0.48 +4.0 343,684 + ABIE53_004169 0.48 +0.1 343,685 - ABIE53_004169 0.48 -0.2 343,711 + ABIE53_004169 0.50 +1.4 343,712 - ABIE53_004169 0.50 +1.8 343,792 + ABIE53_004169 0.55 -0.2 343,792 + ABIE53_004169 0.55 -1.2 343,793 - ABIE53_004169 0.55 -0.7 343,793 - ABIE53_004169 0.55 +3.5 343,795 + ABIE53_004169 0.55 +1.1 343,795 + ABIE53_004169 0.55 -1.4 343,796 - ABIE53_004169 0.55 +2.1 343,798 + ABIE53_004169 0.55 -0.4 343,798 + ABIE53_004169 0.55 -1.0 343,919 - ABIE53_004169 0.62 +0.1 343,919 - ABIE53_004169 0.62 -1.2 343,919 - ABIE53_004169 0.62 +2.1 343,919 - ABIE53_004169 0.62 +2.6 344,068 + ABIE53_004169 0.72 +0.2 344,069 - ABIE53_004169 0.72 +1.0 344,164 + ABIE53_004169 0.78 -0.7 344,179 - ABIE53_004169 0.78 +0.8 344,455 + +0.3 344,455 + -0.2 344,456 - -0.1 344,459 + +0.6 344,482 + +0.2 344,483 - -0.3 344,483 - +0.9 344,512 + -1.1 344,512 + +2.2 344,513 - +0.6 344,513 - -0.7 344,513 - +0.6 344,527 + +0.3 344,556 + -2.2 344,614 + +3.6 344,614 + +0.5 344,614 + +1.2 344,615 - -1.3 344,701 + ABIE53_004170 0.17 -1.2 344,732 - ABIE53_004170 0.20 +0.2 344,741 - ABIE53_004170 0.21 +3.4 345,376 + ABIE53_004170 0.88 -0.3 345,376 + ABIE53_004170 0.88 +0.8 345,377 - ABIE53_004170 0.89 +1.2
Or see this region's nucleotide sequence